Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02378 ATGGAAGGTGAGGAGGGGAAACAGTCTTCCCAAAAAAACCCTTACGTTGAACTAGAAGAAGTTGACTTTGATTTTATTCTAGCAATGAGCATGCAAGAACAAGAGAGAGAGTTCACAATGCTTTCAACTATTGAAAGTGAAAGTGATGAATATCTAAGTGACTCCTCTATAGATAATGATGATGATGGTGATCCTGACTTTATAGCGAGTCAAGAGTTTGAAACCGACCTTCGGTTTCTTGAAGGTGAAGGAAGCGACGATGATGATGAAGACATGGAAATGGAAGAAGATGAGATTGATCCAGACGAATTATCTTATGAAGAATTGATGGAGTTGGAAGAGTTTATAGGAGAAGAAACAAGAGGGTTATCAGCAAATGAAATCTCTTTGTGCTTGTACCCTTATACCTGCCAATGTGCTGAAAGCAAAAGTGGCATTGATCGTTGTGTGATTTGTCAGGTTGAATATGAAGAAGGTGAAGCACTAGTGGCACTTCAATGTGAGCACCCTTATCATTCAGATTGCATAAGAAAGTGGCTTCAAATTAAGAAGGACTGGCGGCAAATAAAAGTCCAAATTTTGCCGCCCCTGGCGTGA 597 0.4003 MEGEEGKQSSQKNPYVELEEVDFDFILAMSMQEQEREFTMLSTIESESDEYLSDSSIDNDDDGDPDFIASQEFETDLRFLEGEGSDDDDEDMEMEEDEIDPDELSYEELMELEEFIGEETRGLSANEISLCLYPYTCQCAESKSGIDRCVICQVEYEEGEALVALQCEHPYHSDCIRKWLQIKKDWRQIKVQILPPLA 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02378 198 MobiDBLite consensus disorder prediction 42 73 - -
Gma04g02378 198 MobiDBLite consensus disorder prediction 51 69 - -
Gma04g02378 198 MobiDBLite consensus disorder prediction 81 100 - -
Gma04g02378 198 Pfam Ring finger domain 148 183 IPR001841 -
Gma04g02378 198 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 184 IPR045191 GO:0061630
Gma04g02378 198 SUPERFAMILY RING/U-box 108 185 - -
Gma04g02378 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 193 IPR013083 -
Gma04g02378 198 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 1 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02378 Gma-Chr4 54161587 54164739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02378 87 184 C3H Transcription Factor Family AT3G63530 44.554 6.34e-21 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02378 K19045 - gmx:100526881 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02378 04 54161587 54164739 Gma06g01019 06 9520181 9520588 GST
Gma04g02378 04 54161587 54164739 Gma14g01408 14 29903522 29904709 PCT