Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02345 ATGGGGAGGGGTAAGATTGAGATCAAAAGGATTGAGAACTCAAGCAACAGGCAAGTTACCTACTCAAAGAGGAAGAATGGGATCCTTAAGAAGGCAAAGGAAATTAGTGTTCTATGTGATGCTCAAGTTTCCCTTATCATCTTTGGTGTCTCTGGGAAGATGCATGAGTACATCAGCCCCTCCACTACGTTGATTGACGTCCTGGACAGATACCAAAGAGCCTCTGGGAAGACCCTGTGGGATGCTAAGCATGAGAACCTCAGCAATGAAATTGATAGAATCAAGAAAGAGAATGACAGCATGCAAattgagctcagGCACTTGAAAGGAGAGGACATCACGTCACTGAATTACAAGGAACTGATGGCTCTAGAGGATGCCCTTGAAAATGGCCTCAGTGGAGTCCGTGAGAAAAAGATGGAAGTGCACAGGATGTTCAAGAGAAATGACAAGATTTTGGAGGAGCAAAATAAGGAACTCAATTTCCTTCTGCAACAACATTTGGCACTAGAAGGTATGGGAAACATGCATGGACAATGGATTTAA 546 0.4267 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFGVSGKMHEYISPSTTLIDVLDRYQRASGKTLWDAKHENLSNEIDRIKKENDSMQIELRHLKGEDITSLNYKELMALEDALENGLSGVREKKMEVHRMFKRNDKILEEQNKELNFLLQQHLALEGMGNMHGQWI 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02345 181 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 174 - -
Gma04g02345 181 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 174 - -
Gma04g02345 181 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma04g02345 181 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma04g02345 181 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma04g02345 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma04g02345 181 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma04g02345 181 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Gma04g02345 181 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma04g02345 181 Coils Coil 77 111 - -
Gma04g02345 181 Pfam K-box region 81 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma04g02345 181 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Gma04g02345 181 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Gma04g02345 181 Coils Coil 153 173 - -
Gma04g02345 181 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma04g02345 181 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02345 Gma-Chr4 53882513 53885707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02345 1 143 MADS-box Gene Family AT5G20240 69.930 6.03e-70 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma04g02345 K-box 1.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02345 K09264 - gmx:100795861 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02345 04 53882513 53885707 Gma04g02345 04 53882513 53885707 ECH
Gma04g02345 04 53882513 53885707 Gma06g01052 06 9851766 9854459 GST
Gma14g01429 14 30387870 30391601 Gma04g02345 04 53882513 53885707 PCT
Gma04g02345 04 53882513 53885707 Gma14g01429 14 30387870 30391601 PCT