Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02344 ATGATTGAAATGGGGTCGTGTGGGAGATCTGCTGCCATTGATGATCCCTCAGAAAAGTTTGTAATTGAGCAGCAGCATTTGTGCTCAGAGGTTCAAGAGCAGGTTGTTTCTGTGCAGGAGTCTTGTTTAGAAGAAGAGGCTTACAATGTGGTGGACTCTAATGTTGAGCTCTCCACTGTGACTGATGGTTGTCTGCGAGGGGACCGTGTCAGTTCTGAAGGACGTGTTGATGTTACCGAGGGGTCCGGAGAGGGTTTGGGTTTGGCGAGTGAATGCAAAAATGCTGATTTGTTGCCACTGGAGAAATCTACTCAGGATGATTGTCAGAATTGTTTGGGTGTTTCTTGTGGGAGCATTGAAGTTCTCTGTGTAAACAGTGGCTCAGAGGGAAATTTTCAGGATGAGGGTATCTTTGATCAGCTGTCGGGGTCCTTAACTGCAGATGATTCACAGAGGCGTTGTGCTCAACAGGATGAGCAGAAGGATAATAAGAGTGACGTATTGCCTGCAGCAGGAGATGATTCGGATGTCGTGGAAGGCAAAAATGATGAGACTGGTGTTCTTGCTGATGCTTTCAGTCATGCACTTGATTTCAGGGATTGCGAAGTGTCTTTGGAATCAGAATCCATGGCTGACTTGCTAGTTGATTGCAACCAGCAAAGTGAGCAGGAGAAAATTATGAGAAATCCAGATCCCTTGTTGAATGTAGTTGAAAAATGTGACGCTCTAATTGGGgaggaaactgatgcttgcaggaagatatctcctactccggctatggaagtgccatcaggtgcattatgtacagatacagaagtagagagcataaatgatcacccatATATTGAGGATCAGAATAGTACTTGTGAAGAAAAGTTTAAAGCTTTTGTTGATGAAGAAGTCATCAACATTAATTCATGTATAAAAATATCATCCTCTCTAGATTGCCAGGAGACTGTTGCGAGCTCACCTGTAGTTGGTTTTCCTTGTGAGCCTGCCCTGTTGGATCCAGGGTGTGAAATGAAGAATGACATGCTGCAAATAGAAGATGATTTCTGTAAATTGAAGGACTGTTCCTCAGAGGAAACTACCAACTCTACCTTTAGAAAACCATTTTCTCCTGAATCAGGTCTGCCCTCTGTTGCTTTAATTACCAACTGCTCTGCAAAGGATGTTCTTGATCTCCATTCTAAGGGTGATGATGTCTCCATTAATAATAATAATGCTGTTAACAATCCAGGGCAGATGGATAATGATGGAACAAAAGCTGTTGAAGTTGATTGTATCACTGAAAGCATACCGTTACCTTCTCTAAGGGATAGTCGAAGAACTAAATTTGGCCGTAAGACACAAACCAAAAAGGCTTCAAGAAATTGCAAGAACAAAACCAAGGTGACGCATTCAAATGGGGGTATGAAGCTAAACTTAGAGGCTGCTAGAAAGAAAAGAAGTTGTTTCTCCAAACCAGCTCGTTCTTCTGTCTGGGGATTGATTGGGAATATTGAACAGTTTTTTGAGCAAGATAATGAGCTTGGAGTTGGTGAAGCTGTGTGCCAAGAATTGGGGAAGGCTAGAAGCAAGCGTCAAAGTGGGAAAGCGGTTAAGAATGGTGCAAGTACTACCTCATTGAGTTCAGTACAGAAGTCTTCTGTTTCAACTACTCGTGTTCGTCTGAAGATTAAATTTGGGAAAGAAGTTGATTTAAGTTGCTCAAATGTCTTGATTCCAGAGTCAGTTGATGGTTTGGCTTCTGCTTCTTACTTGGTGTCTGATTCAGGTTCTCAGAAAGTAGCCGGCAATGCTGATGATAAAATTTCTGATGCGGTGGCTTTGGGAAATTCAGAATCTTTCAGTAATGACCTGGGCAAGGATGGTCTTGTTCTAAATGAACAAGTTGCAAATAACCCCTTAGAAACTACTGAAATAACAGAGAAGTCATATGGGGATGCAGAGGAACCTTGTCTTGCTGTTCCTCCTGAGAAGGTGGTTGAAGCATTGATTGAACCTATGAGTAATAAGGGTATGGATCCTGGAACCTCACCTGATTCTGAAGTTATCAATTCAATTCCCGAAGTCCAGATTGGAGAAAGACATCAAGAAGACGTACATCATGCTGTTTTAGGTTCTTCTAAAGAATTAAATTCTAAATTGGATGTTACCATCAGTAAGAGAGGGAAGAAGAAAGAGAAACTTATTTGTTCTGGTAATTGTATCACTGAAGATGGATCACAAGGTCCACGTGGGAATAGTAGAGCTAAGCATTCAAAGAATCACAGACGTAAGAAAAATTGCAGGGATGCATTTAGCTCTTTGGAGTTGCCCACTGAGATAAGCAAATCTGTGACCAGTAAAGAATTGTCCCCAGAATTATTACCCCATTCTGGAGAGACTGAACTTGGAGGCTCCGTCGAGGCTTTGAAAGTTAAAAATCATATGGACGCTAAGACAAGTAATAAACCATCTGTTGACCATGGATTTTCAGATTCCCTGGTTTCTGAGAAAATGCTGTCATCTGCAAGACCTTTGGGGCGTAAACTACCTAAAAGTCTTAGACCTAGTAAAGTTAGCAAGACCAAATCTAAAGCTTCTGACTCATCTGGCAGGAAAAAGACTACTGCTGGTACATGCAAGGAGAAACAGAAAAATCCAATTAATAAGAGCAAAGTCAAGGGAAAAGGTGCCTCTCTTAAAGTTACATGTGAAGTGGAAGATTGCCCACATCCAGAAGCAAATGCTGGAAATCATAAGCTGGATGCTATTGGAAAAATTATTGCTGATGACAACAGAGTATCGGTCAATGTATCTAATTTGGACATGCTGTCTGGTGTTGGTTTTGGGGAGCAACTTCTATCACCCCGTAATGCATGGGTGCGTTGTGATGATTGTCACAAGTGGCGGCGAATTCCAGCTGTGCTTGCAGACCGAATTGATGAAACTAACTGCACCTGGACATGTAAGGACAGCAGTGATAAAGCCTTTGCTGATTGTGCTATCCCTCAAGAAAAGTCTAATGCAGAGATTAATGCGGAGTTGGGATTATCAGATGCCTCGGGTGAAGAAGATGCATATGAAGGTTCCAAAAATTTTAAGGAATTAGAATATTGGCCACCTATAGTTTCCCAGGAGTCAACTTTTACCAATATTTTGACCAATGAATTTCTGCATCGTAGCCATAAAACTCAGACTATTGACGAGATAATGGTATGTCATTGCAAGCCATCTCAAGGAGGAAAGTTAGGCTGTGGGGATGAATGTCTAAATCGGATTCTTAATATCGAATGTGTGCAAGGAACCTGCCCATGTGGGGACCGTTGTTCCAACCAGCAGTTCCAAAAACACAAGTATGCTAGCCTGAAGTGGTTTAAATGTGGGAAAAAGGGTTACGGACTGAAGGCAATTGAGGATGTAGCTCAAGGCCAGTTTCTTATTGAATACGTTGGAGAGGTGCTTGATATGCAAACGTATGAGGCACGGCAAAGAGAGTACGCTTTGAAGGGCCATCGGCATTTCTATTTTATGACCTTGAATGGTAGTGAGGTGATAGATGCAAGTGCAAAAGGAAACTTGGGGCGTTTCATTAATCATAGTTGTGATCCTAATTGTCGGACAGAAAAGTGGATGGTGAATGGGGAAATCTGTATTGGACTGTTTGCATTGAGGAATGTTAAGAAGGATGAAGAATTGACATTCGATTACAACTATGTAAGGGTTTTTGGTGCTGCTGCCAAAAAATGCTATTGTGGTTCGTCTAACTGTCGAGGTTATATAGGTGGTGGTGATCCACTTAATGCTGAATTGATAGTTCAAAGTGATTCAGAAGAAGAATTTCCCGAACCTGTTATGCTTACCAAAGATGGTGAAATTGAAGATGCTGTACCTACACCCAAGTATTTTAATAATGTTGATACAGAATCTGCTAAACATATGTTGAAAGACAGGGATATATTGGACAATCCTACAACTGCTATAGATTCAGATGGTTCTCCAGAGAAAGAGAGTTCTATGAACCCTGCCTCTGCCATTTCTCTGTTGCACAGCTCAGCAGAAATGGAGGATTCAAAGGGTAAATTACCATCTTCTGTTAGAGATGAAGAAATTTCTCAACAAATGGAGGATGTAACAAGCAAACCCATGCCTTCTGTACACCAAGGATATGAAAAGGAATCAGAGTTTGCAGACAAAACTTCTTCCATTCAAAGATTAGAGACTACTTCTCCCCCTACAACTGTCAGCAAAATGTTACCGAATTCTGCTGGTAGTAATAGGGAGTCCAAGTCTGAAATAATTGGAGGCAAGAAGACTCCTAAGTTAAATGGTTCTGTTAAAAAGGGGAAGGTTCATGCTAATCCTCCAAATGGCCTTAAAACTGAGGTGACAGCCAATCGATTACAGGTGTCATCTATAAAACACAAAAAAGTAGAAGGTTCTTCCAATGGACGGTTTGAAGCAGTTCAGGAGAAACTTAATGAGTTGCTGGATGGAGATGGTGGAATAAGCAAAAGAAAAGATGCCACCAAAGGGTACTTGAAGCTTTTGTTTCTCACTGTGGCATCAGGTGATAGAATTAATGGTGAAGCTATTCAAAGCAATCGAGATCTTTCCATGATCCTTGATGCCCTTCTGAAAACAAAATCTAGAGCAGTGCTGAATGATATAATTAACAAAAATGGTTTACAGATGTTACATAACATTATGAAGCAGTACAGGCATGACTTCAAAAAAATTCCAATACTACGAAAGCTTCTTAAGGTCTTGGAGTTCCTAGAAGCAAGCAAGATTTTGACATCTGAACATATTAATGGTGGTCCTCCTTGTCATGGAATGGAGAGCTTTAGAGAGTCAATGCTTTCTCTGACAGAGCATGAAGACAAACAGGTCCATCAAATTGCTCGAAACTTCCGAGACAGATGGTTTCCCAGACACGCCAGAAAACATGGCTATATGGACAGGGATGATAACAGAGTGGAATCTCACAGAAGTTTCAAGTGCAACAGATTTTCAGCATCACACAGTCAGAGGCATGAACAGGATTTAAGGACTACAGAAGCAATTGATTGTAGTCAGCAGGCGATGCTTGTGACAACTCCAGTAGATGCTGAAACCTGGGAAGGCTGTCCTGTGCAGTCTCTAGATGGGGTTGAAATCAAAAGAGCTAAAAAACGCAAGCGCAAAAGCCGATGGGATCAACCAGCCGATACAAACTCGCATTCTGATGCCGTTATGAGCTCTATCGGTGAAAGCCAGAACATTCCCGAGGATGGTCCACCAGGGTTTTCATGTCCAGTAGGTTCATTAAATGCTTCCCTAAACTCTGGTAATCTTGCCTTGCAAAATGCAAGCCGTTCTGGATGCCCCTCTGATATAGTTATTGGTCATCCAAAAGAGAAATTTAACTCTCACTTGCCTGTCTCATATGGAATGCCATGGTCTGCCCAGCAATATGGAACACCTCATGCTGAATTTCCTGAGTGTTGGGTCACTGCACCTGGCATGCCTTTCAACCCATTTCCTCCACTACCCCCGTATCCACGGGACAACAAAGACTGTCAACCTTCTAATACTACTAATGCTATGATAATTGATCAGCCTGCTGAAGTTAAGCAGGGGGATACCAGTGGTATGGTTAATTGTTGCTCAGATGATATGATTCCCAGCACAACTGGTGTTAACTCTGAAGACTCCAACCTACTGTTTGAGGACGATAAACACATAAGTAAACGATTGAAGGGTGATTCCAATGATTTGGGAACGAGGTACTTTAGACAGCAGAAAATACACCGACCATGGTTCAAGAGGAATGCATGGAAATGTGATGAGAACAACTCTTGTGGTGATATGTGCAGTATAGATGTAGGAGATGTACCAAAAGAGTCAAAAGTTACTTGTGACGCGGAGGATGCAATCTGTAGAGAGGAGTAA 5919 0.41 MIEMGSCGRSAAIDDPSEKFVIEQQHLCSEVQEQVVSVQESCLEEEAYNVVDSNVELSTVTDGCLRGDRVSSEGRVDVTEGSGEGLGLASECKNADLLPLEKSTQDDCQNCLGVSCGSIEVLCVNSGSEGNFQDEGIFDQLSGSLTADDSQRRCAQQDEQKDNKSDVLPAAGDDSDVVEGKNDETGVLADAFSHALDFRDCEVSLESESMADLLVDCNQQSEQEKIMRNPDPLLNVVEKCDALIGEETDACRKISPTPAMEVPSGALCTDTEVESINDHPYIEDQNSTCEEKFKAFVDEEVININSCIKISSSLDCQETVASSPVVGFPCEPALLDPGCEMKNDMLQIEDDFCKLKDCSSEETTNSTFRKPFSPESGLPSVALITNCSAKDVLDLHSKGDDVSINNNNAVNNPGQMDNDGTKAVEVDCITESIPLPSLRDSRRTKFGRKTQTKKASRNCKNKTKVTHSNGGMKLNLEAARKKRSCFSKPARSSVWGLIGNIEQFFEQDNELGVGEAVCQELGKARSKRQSGKAVKNGASTTSLSSVQKSSVSTTRVRLKIKFGKEVDLSCSNVLIPESVDGLASASYLVSDSGSQKVAGNADDKISDAVALGNSESFSNDLGKDGLVLNEQVANNPLETTEITEKSYGDAEEPCLAVPPEKVVEALIEPMSNKGMDPGTSPDSEVINSIPEVQIGERHQEDVHHAVLGSSKELNSKLDVTISKRGKKKEKLICSGNCITEDGSQGPRGNSRAKHSKNHRRKKNCRDAFSSLELPTEISKSVTSKELSPELLPHSGETELGGSVEALKVKNHMDAKTSNKPSVDHGFSDSLVSEKMLSSARPLGRKLPKSLRPSKVSKTKSKASDSSGRKKTTAGTCKEKQKNPINKSKVKGKGASLKVTCEVEDCPHPEANAGNHKLDAIGKIIADDNRVSVNVSNLDMLSGVGFGEQLLSPRNAWVRCDDCHKWRRIPAVLADRIDETNCTWTCKDSSDKAFADCAIPQEKSNAEINAELGLSDASGEEDAYEGSKNFKELEYWPPIVSQESTFTNILTNEFLHRSHKTQTIDEIMVCHCKPSQGGKLGCGDECLNRILNIECVQGTCPCGDRCSNQQFQKHKYASLKWFKCGKKGYGLKAIEDVAQGQFLIEYVGEVLDMQTYEARQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRNVKKDEELTFDYNYVRVFGAAAKKCYCGSSNCRGYIGGGDPLNAELIVQSDSEEEFPEPVMLTKDGEIEDAVPTPKYFNNVDTESAKHMLKDRDILDNPTTAIDSDGSPEKESSMNPASAISLLHSSAEMEDSKGKLPSSVRDEEISQQMEDVTSKPMPSVHQGYEKESEFADKTSSIQRLETTSPPTTVSKMLPNSAGSNRESKSEIIGGKKTPKLNGSVKKGKVHANPPNGLKTEVTANRLQVSSIKHKKVEGSSNGRFEAVQEKLNELLDGDGGISKRKDATKGYLKLLFLTVASGDRINGEAIQSNRDLSMILDALLKTKSRAVLNDIINKNGLQMLHNIMKQYRHDFKKIPILRKLLKVLEFLEASKILTSEHINGGPPCHGMESFRESMLSLTEHEDKQVHQIARNFRDRWFPRHARKHGYMDRDDNRVESHRSFKCNRFSASHSQRHEQDLRTTEAIDCSQQAMLVTTPVDAETWEGCPVQSLDGVEIKRAKKRKRKSRWDQPADTNSHSDAVMSSIGESQNIPEDGPPGFSCPVGSLNASLNSGNLALQNASRSGCPSDIVIGHPKEKFNSHLPVSYGMPWSAQQYGTPHAEFPECWVTAPGMPFNPFPPLPPYPRDNKDCQPSNTTNAMIIDQPAEVKQGDTSGMVNCCSDDMIPSTTGVNSEDSNLLFEDDKHISKRLKGDSNDLGTRYFRQQKIHRPWFKRNAWKCDENNSCGDMCSIDVGDVPKESKVTCDAEDAICREE 1972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02344 1972 CDD SET_SETD2 1115 1257 IPR044437 GO:0010452|GO:0046975
Gma04g02344 1972 Gene3D - 947 1009 - -
Gma04g02344 1972 MobiDBLite consensus disorder prediction 1321 1343 - -
Gma04g02344 1972 SUPERFAMILY SET domain 1050 1254 IPR046341 -
Gma04g02344 1972 MobiDBLite consensus disorder prediction 739 799 - -
Gma04g02344 1972 Gene3D SET domain 1013 1266 IPR046341 -
Gma04g02344 1972 MobiDBLite consensus disorder prediction 156 181 - -
Gma04g02344 1972 MobiDBLite consensus disorder prediction 857 885 - -
Gma04g02344 1972 SMART set_7 1116 1239 IPR001214 GO:0005515
Gma04g02344 1972 ProSiteProfiles Zinc finger CW-type profile. 950 1004 IPR011124 GO:0008270
Gma04g02344 1972 MobiDBLite consensus disorder prediction 773 787 - -
Gma04g02344 1972 MobiDBLite consensus disorder prediction 1309 1454 - -
Gma04g02344 1972 MobiDBLite consensus disorder prediction 1396 1424 - -
Gma04g02344 1972 ProSiteProfiles AWS domain profile. 1064 1114 IPR006560 GO:0005634|GO:0018024
Gma04g02344 1972 SMART PostSET_3 1241 1257 IPR003616 -
Gma04g02344 1972 SMART shorttest3 1064 1115 IPR006560 GO:0005634|GO:0018024
Gma04g02344 1972 PANTHER SET DOMAIN PROTEINS 424 1909 - -
Gma04g02344 1972 MobiDBLite consensus disorder prediction 1349 1370 - -
Gma04g02344 1972 Pfam AWS domain 1079 1113 IPR006560 GO:0005634|GO:0018024
Gma04g02344 1972 MobiDBLite consensus disorder prediction 1717 1739 - -
Gma04g02344 1972 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-36 SPECIFIC 424 1909 - -
Gma04g02344 1972 ProSiteProfiles SET domain profile. 1116 1233 IPR001214 GO:0005515
Gma04g02344 1972 ProSiteProfiles Post-SET domain profile. 1241 1257 IPR003616 -
Gma04g02344 1972 Pfam CW-type Zinc Finger 956 1002 IPR011124 GO:0008270
Gma04g02344 1972 MobiDBLite consensus disorder prediction 837 890 - -
Gma04g02344 1972 Pfam SET domain 1127 1233 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02344 Gma-Chr4 53856234 53870055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02344 1099 1256 C2H2 Transcription Factor Family AT2G23740 33.143 2.44e-20 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gma04g02344 SET 3.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02344 - - gmx:100795379 3431.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02344 04 53856234 53870055 Gma04g02344 04 53856234 53870055 ECH
Gma04g02344 04 53856234 53870055 Gma06g01053 06 9862351 9876640 GST