Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02342 ATGCTGCAAACGGATCCCGCCGGAGAACCCGCCCGAGGCGGCGGCTCTGGTGGCCGCACGGTGGTGGTGGGGGTGAAGATGGACTCCCCCTGCAAAGAATTGCTCACGTGGGCTTTGGTCAAAGTTGCACACCCTCGTGATACCGTGGTTGCTCTGCATGTTCTTGGAAGCCATGAAACTGTGAATGGAGTCGGGAAATCGTCGCTGCTTTCGCTTGTCAAGGCATTTGACTCTGTTCTTGCTGTTTATAAAGGATTCTGCAATTTGAAACAGGTAGATCTCAAGCTCAAAATTTGCCGTGGTTCATCAGTGAAGAAAAGTTTGGTTCGAGAAGCGAATGGTTATTCTGCAACTCACATTGTGGTTGGAACTACTCATGGCCTGCATAAAATCCGGTCATCTACCGTTGTAGCTAAGTACTGTGCTAAAAAGTTATCCAAGGATTGTTGTGTTCTTGCTGTCAACAATGGGAAAGTTGTGTTCAAGCGTGACAGCTCGCCGCCGAGTGTTGCAGAGTTACAAGGGATTGATCGTCATAACAGAAATGGTTTGATCGGTTCAATTCAGTGGACACTCGGTAAGAGCACAAAAGTTCTGAGTGATGACAATTCAGGGATGGAAGCGGATGAGAAGAAAACTGGCCAGGTTTCGGATCACAGTTTGGCTAAGTTATTTCTGGAATCTAAAGAAACTGTTCGAAATCCGAGCTGTTCAATCTGTGGTACAACCCTGGCATTGCCAGACTCTTCTTGCTACCAATCTGCAGATGGGGTTTCTGGTGATGATGGTAGAGAGAATTCTTTGGCTATAGTGCCAGTGCAACCCTCCGTTGCAGCCATAACGGAAATGAAACCAGGTTGGCCACTACTACACCGCGGAATTTTATTGGACAGGCAATCTGCTGATAGATTATTGATGCATCCCCAGATCTCCGTGGTCCAGTGGGCAATGAGGTTGCCTTCTAGAAACCTCTCATATGCTGTAGATTGTGATGAAAAACCTAACATTTGTGATCAAGGTCAAGATCAGCATGCCGCTTTAGATAGTGAAAGCGGCGCTCTTGTTCCAGTAGATGCTGAATTAGGGACCGCTTCTTCGCCAGAACACAATTCAGGAAACATTCCCAAAGAATTGGAGGGTCTTCATGAGAAATACTCATCAACTTGCCGATTGTTTGAGTACCAAGAACTTGTATTGGCCACATCGAATTTCTTGCCTGGAAACTTGATCGGGAAGGGAGGAAGCAGTCAGGTTTATAGAGGCTGCCTTCCTGATGGCAAGGAACTTGCCGTCAAGATTCTAAAGCCTTCTGATAATGTGTTGTCAGAATTTCTTCTGGAAATAGAAATTATCACTACCTTGCATCACAAAAACATTATTTCCCTCCTGGGGTTCTGCTTTGAGAATGGCAAACTTCTTCTGGTTTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACCTTCATGGTAATAAGAAAAATTCACTTGTGTTTGGTTGGTCCGAGAGATATAAGGTAGCAGTGGGCATTGCCGAGGCTTTGGATTATCTGCATTCTAAAGACGATCAACCTGTGATCCATCGGGATGTAAAGTCATCAAATGTATTATTATCTGAGGATTTTGAACCCCAGCTCTGTGATTTTGGACTGGCAAAATGGGCATCATCTTTGTCATCACATATAACCTGCACAGATGTTGCTGGAACCTTCGGTTACTTGGCTCCTGAATACTTCATGTACGGCAAAGTAAATGATAAGATCGATGTCTATGCATTCGGTGTCGTGCTCCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAGCCCTGATTATCCAAAAGGCCAAGAGAGCCTTGTTATGTGGGCAACTCCAATTCTAAATAGTGGAAAGGTGTTACAATTGTTAGATCCTAGTTTGGGTGAAAATTATGATCATGGGGAGATGGAAAAGATGGTATTGGCAGCCACTCTCTGTATAAAACGTGCTCCAAGGGCTAGGCCTCAAATGAGCCTTATCTCAAAGCTCCTTCAGGGTGACGCCGAGGCAATCAAGTGGGCTAGGTTACAAGTTAATGCTTTGGACGCACCAGAAATGCTTGACGATGAAGCGTGTCCACCTAGTAATCTACAGTCGCATATAAATCTTGCACTGCTTGATGTGGAGGATGACTCACTTTCCATGTGCAGTGTTGAGCAGGGTCTCACTTTGGAGGATTACTTGAGAGGCCGGTGGAGCCGTGCATCAAGCTTTGACTGA 2253 0.4541 MLQTDPAGEPARGGGSGGRTVVVGVKMDSPCKELLTWALVKVAHPRDTVVALHVLGSHETVNGVGKSSLLSLVKAFDSVLAVYKGFCNLKQVDLKLKICRGSSVKKSLVREANGYSATHIVVGTTHGLHKIRSSTVVAKYCAKKLSKDCCVLAVNNGKVVFKRDSSPPSVAELQGIDRHNRNGLIGSIQWTLGKSTKVLSDDNSGMEADEKKTGQVSDHSLAKLFLESKETVRNPSCSICGTTLALPDSSCYQSADGVSGDDGRENSLAIVPVQPSVAAITEMKPGWPLLHRGILLDRQSADRLLMHPQISVVQWAMRLPSRNLSYAVDCDEKPNICDQGQDQHAALDSESGALVPVDAELGTASSPEHNSGNIPKELEGLHEKYSSTCRLFEYQELVLATSNFLPGNLIGKGGSSQVYRGCLPDGKELAVKILKPSDNVLSEFLLEIEIITTLHHKNIISLLGFCFENGKLLLVYDFLSRGSLEENLHGNKKNSLVFGWSERYKVAVGIAEALDYLHSKDDQPVIHRDVKSSNVLLSEDFEPQLCDFGLAKWASSLSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISPDYPKGQESLVMWATPILNSGKVLQLLDPSLGENYDHGEMEKMVLAATLCIKRAPRARPQMSLISKLLQGDAEAIKWARLQVNALDAPEMLDDEACPPSNLQSHINLALLDVEDDSLSMCSVEQGLTLEDYLRGRWSRASSFD 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02342 750 CDD USP_Like 20 154 - -
Gma04g02342 750 Pfam Protein kinase domain 408 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g02342 750 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 19 151 - -
Gma04g02342 750 PANTHER - 12 733 - -
Gma04g02342 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 525 537 IPR008271 GO:0004672|GO:0006468
Gma04g02342 750 ProSiteProfiles Protein kinase domain profile. 404 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g02342 750 ProSitePatterns Protein kinases ATP-binding region signature. 410 432 IPR017441 GO:0005524
Gma04g02342 750 Gene3D Transferase(Phosphotransferase) domain 1 479 690 - -
Gma04g02342 750 PANTHER OS08G0249100 PROTEIN 12 733 - -
Gma04g02342 750 Pfam Universal stress protein family 19 151 IPR006016 -
Gma04g02342 750 Gene3D Phosphorylase Kinase; domain 1 372 478 - -
Gma04g02342 750 SMART serkin_6 404 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g02342 750 Gene3D HUPs 18 156 IPR014729 -
Gma04g02342 750 SUPERFAMILY Protein kinase-like (PK-like) 385 676 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02342 Gma-Chr4 53837006 53840402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02342 304 674 Trihelix Transcription Factor Family AT1G68690 38.196 1.56e-74 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gma04g02342 Pkinase 6.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02342 - - aprc:113846853 1109.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02342 04 53837006 53840402 Gma04g02342 04 53837006 53840402 ECH