Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02278 ATGGACAACATGGGTGACCCAAAGAGCATCATACATGAGCTGCTACAAGGTTTGGAATTGGCAAGGCAACTCCAAGTGTATCTCCACCTGCCAACTTCGTCCCAAGAAACACGTGACCTACTGATCCAGAAGATCATATCAACATTTGAAAAAGCACTTGAAATGGTAAATTGTAAAGGGCCAGTGCCAGCGGGTGAGTCATCACATCATCCCCTAGGGGCTGCATTAATCCGAGTGTCAGATTCACCTTTGAGCAGTAGTCCCCGCAGTGAAGACTCTGATAGAGATTTCAAGGACCAGGACCCCAATGCTTTCAAAAAGAGAAACACTTTGCCAAGATGGACAAAACATATTCGAGTTACCCCAGGAATGGGGGTGGAAGGGCCTCTTGACGATGGATATAGTTGGAGAAAATATGGCCAGAAAGACATCCTTGGAGCCTTGTACCCGAGGGGCTATTACAGATGTACCCACAGAAATGTTCAAGGCTGCATGGCAACAAAGCAAGTGCAAAGATCCGATGAAGACCCCACCATTTTCGAAATCACTTACCGAGGAAAACACACCTGCACAATGGCCAACAACGTGGGTTCTTCATCACCAATTCCACCAGAAAACCAAGAACCAAGTTTGAACAACACAAATCCTCAGCAGCAGAATATCTTGCAAAACCTTGAACAACAACAAAGCGACCTACTTTTGAGCCTGCGGAAAGGGTTGAGAGTCCAAACAGAGAACCTAGATTCCCCTGACCAACAATCATTGGTTCCGTTCCGTTTCCCTTTGTCCACAAACATCAAAATTGAAAGCCAAGTTTTCCCTTCCCCTGTGCTTGAAAACTTTATTAGTTCTCCTTCTTATATGTCCTCTGCTGCTTCAGGAATAAGTCACTTTTCAGTGTCTCCAAGTGGGGTGAACAGCTTTGGAGGGAACCCAAATTTGGCAAATTCTGAGTCTCAGATCAATGACATGATCCCAGCCACTACTACTTCAGCTCCAAACTCATCAACCGTTGGCTTAGAGTTCCCTTTTGACCAGTTTGAATTCGATGGCCAGAACTTCACATTCGATAACCCTCCGTTTTTCTCTTGA 1092 0.4533 MDNMGDPKSIIHELLQGLELARQLQVYLHLPTSSQETRDLLIQKIISTFEKALEMVNCKGPVPAGESSHHPLGAALIRVSDSPLSSSPRSEDSDRDFKDQDPNAFKKRNTLPRWTKHIRVTPGMGVEGPLDDGYSWRKYGQKDILGALYPRGYYRCTHRNVQGCMATKQVQRSDEDPTIFEITYRGKHTCTMANNVGSSSPIPPENQEPSLNNTNPQQQNILQNLEQQQSDLLLSLRKGLRVQTENLDSPDQQSLVPFRFPLSTNIKIESQVFPSPVLENFISSPSYMSSAASGISHFSVSPSGVNSFGGNPNLANSESQINDMIPATTTSAPNSSTVGLEFPFDQFEFDGQNFTFDNPPFFS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02278 363 Gene3D WRKY domain 124 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma04g02278 363 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 359 IPR044810 GO:0003700
Gma04g02278 363 MobiDBLite consensus disorder prediction 196 216 - -
Gma04g02278 363 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED 1 359 - -
Gma04g02278 363 MobiDBLite consensus disorder prediction 80 109 - -
Gma04g02278 363 ProSiteProfiles WRKY domain profile. 125 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma04g02278 363 MobiDBLite consensus disorder prediction 88 106 - -
Gma04g02278 363 Pfam WRKY DNA -binding domain 131 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma04g02278 363 SUPERFAMILY WRKY DNA-binding domain 129 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma04g02278 363 SMART WRKY_cls 130 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02278 Gma-Chr4 53242762 53244729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02278 8 348 WRKY Transcription Factor Family AT5G24110 34.957 2.82e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gma04g02278 WRKY 6.5e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02278 - - gmx:100776906 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02278 04 53242762 53244729 Gma06g01123 06 10534865 10537228 GST