Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02251 ATGCTTGTGTTTCGATTGAAGCCTGGCAGTTACAAGGAAACAGCGACCCTCGCACTTTCCCACTTCAGGCACTTGGTCTTCAACTTCACACGCGCCGGTGACTCTGGGTGCCCGCCACGCGCTGGCTTCGGGGTTCGGAGAGGCTACAACGTCGTTTCCTCGTTGGGGGACCCACCCGAAGTCTGGTCCGGCGGCGGGATTGTCGTTCGCCCCGGGAATTCGAATTTCGATGTCGCCGGCGGCGGCGCCGCCCCGAATTCCGGCGATTCGAAAGAGGGATGTTGGGGTGGCTCCAACTTGGGGAACAGTTTCCCTACGCCAAAGGAGATTTGCAAGGGGCTAGACAAATTCGTTATTGGACAAGAGAGGGCAAAGAAGGTGCTTTCTGTGGCGGTTTATAATCACTACAAGAGGATATTTAATGAAACCTCTTCGTCCAAGTGGCCTGCAGGAGATTCAGATAATAATAATGTGAAGACTGATGCTGTTGATGATGATAGAGTTGAACTTGAGAAAAGCAATATCCTTCTAATGGGGCCAACAGGATCAGGTAAATCAACATTACTTGCCAAAACTTTGGCTCGGTTTGTAAATGTTCCCTTTGTTATTGCAGATGCAACTTCACTCACTCAGGCAAGTTATGTTGGAGAGGATGTAGAATCCATATTATACAAGCTCCTCATGGTTGCAGATTATAATGTTGCAGCTGCACAGCAAGGCATTGTTTACATTGATGAAGTTGACAAGATTACTAAAAAGGCTGAGAGCCTTAATATCAGTAGAGATGTTTCTGGTGAAGGTGTTCAGCAGGCATTACTAAAGATGCTTGAGGGGACGGTTGTCAATGTTCCTGAGAAGGGAGCCCGAAAGCATCCTAGGGGTGACAATATTCAGATTGACACAAAGAATATACTTTTCATTTGTGGAGGAGCCTTTGTTGACTTAGAGAAAACAATCTCAGAAAGCCGTCATGATTCTTCTATTGGATTTGGGGCGCCTATACGTGCAAACATGAGGACTGGTAAAGTCACAGAAGCTGCTGTGGCATCATCTTTATTACAAACTGTTGAAAGTAGTGATCTTGTTGCATATGGTTTAATACCTGAATTTGTTGGGAGGTTTCCTATCCTTGTCAGTTTGTCAGCTTTAACTGAAAATCAACTCATTCAGGTCCTCACAGAACCAAAGAATGCTCTTGGGAAGCAATACAAGAAGATGTTCCAAATGAATGGGGTAAAGCTACATTTTACAGAAAACGCTCTAAGATCAATTGCCAGAAAGGCAATATCTAAAAATACTGGTGCTCGGGGATTACGATCAATATTAGAAAATGTGTTGGTAGATGCCATGTATGAGATTCCTGATATTAGAACAGGCGATGATGTTATAGATGCTGTTGTTGTTGATGAAGAGGCTGTTGGAGGTGAGGGGCGTGGGAGAGGGGCTAAAATCCTTTATGGTAAGGATGCATTGGATCGATATCTTTCGGAGCAGAAAAATGATTCAGAGAccatggaggcatcagccgcagataatgaagcagatacggaacttccttccattgttgccagCATTGGTGGAAGGAAGGGGGTTTGGTTTGGTGAGTTGATGGACTTGATGAGCGTTGAGTGTGTGTCATCCTCGGACGGCATGGATGAGGATGAGATCCACGCCAACCATCATCACTCTGAGTTTTCTTCCACAAAGCCTCGCAATGGAGGCACTAGTAACATCAATTCTGTGGGCCCCAACGGAATTGCTCCGGCAACCAGCGTCCATGAGTTGCTGGAATGTCCTGTTTGTACTAATTCAATGTACCCTCCAATTCATCAGTGTCACAATGGCCACACACTGTGTTCCACATGTAAAACTAGGGTGCACAACCGATGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTGGAGAAGGTGGCTGAATCACTTGAGTTACCTTGCAAGTACTACTCCCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGCAATTTTAGACCATATAGTTGTCCTTATGCTGGATCGGAGTGTTCTGTTGTTGGGGATATTCCTTTCCTTGTTGCTCATTTGAGGGACGATCATAAAGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAATCAAATCCACGAGAAGTAGAGAATGCCACTTGGATGCTCACAGTATTTCATTGTTTTGGCCAATATTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGCATGGCCCCTGTATACATGGCATTCCTTCGTTTTATGGGTGATGAAAATGAGGCTCGGAATTATAGCTATAGCCTAGAGGTTGGGGCCAATGGTAGGAAACTCATTTGGGAGGGTACACCACGAAGTGTTCGTGATAGTCACCGTAAGGTTAGGGATAGCCATGATGGGCTCATTATTCAAAGAAATATGGCCCTATTTTTCTCTGGTGGGGATAGAAAGGAGCTGAAGCTCAGAGTCACAGGAAGAATATGGAAAGAACAGAATTCAGATGCTGGGGTGTGCATGCCAAATCTCTGTAGTTGA 2580 0.4411 MLVFRLKPGSYKETATLALSHFRHLVFNFTRAGDSGCPPRAGFGVRRGYNVVSSLGDPPEVWSGGGIVVRPGNSNFDVAGGGAAPNSGDSKEGCWGGSNLGNSFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIFNETSSSKWPAGDSDNNNVKTDAVDDDRVELEKSNILLMGPTGSGKSTLLAKTLARFVNVPFVIADATSLTQASYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKNILFICGGAFVDLEKTISESRHDSSIGFGAPIRANMRTGKVTEAAVASSLLQTVESSDLVAYGLIPEFVGRFPILVSLSALTENQLIQVLTEPKNALGKQYKKMFQMNGVKLHFTENALRSIARKAISKNTGARGLRSILENVLVDAMYEIPDIRTGDDVIDAVVVDEEAVGGEGRGRGAKILYGKDALDRYLSEQKNDSETMEASAADNEADTELPSIVASIGGRKGVWFGELMDLMSVECVSSSDGMDEDEIHANHHHSEFSSTKPRNGGTSNINSVGPNGIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNSDAGVCMPNLCS 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02251 859 ProSiteProfiles Zinc finger RING-type profile. 598 634 IPR001841 -
Gma04g02251 859 PANTHER CLP PROTEASE REGULATORY SUBUNIT CLPX1, MITOCHONDRIAL 4 524 - -
Gma04g02251 859 SMART ClpB_D2_small_2 383 479 IPR019489 -
Gma04g02251 859 MobiDBLite consensus disorder prediction 560 584 - -
Gma04g02251 859 Pfam AAA domain (Cdc48 subfamily) 171 376 IPR003959 GO:0005524|GO:0016887
Gma04g02251 859 CDD Sina 712 840 - -
Gma04g02251 859 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 554 650 IPR013083 -
Gma04g02251 859 SUPERFAMILY RING/U-box 590 637 - -
Gma04g02251 859 MobiDBLite consensus disorder prediction 568 584 - -
Gma04g02251 859 Pfam C-terminal, D2-small domain, of ClpB protein 383 452 IPR019489 -
Gma04g02251 859 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 102 472 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Gma04g02251 859 SMART AAA_5 171 335 IPR003593 -
Gma04g02251 859 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 4 524 - -
Gma04g02251 859 SUPERFAMILY TRAF domain-like 651 843 - -
Gma04g02251 859 ProSiteProfiles Zinc finger SIAH-type profile. 651 711 IPR013010 GO:0008270
Gma04g02251 859 CDD RING-HC_SIAHs 596 634 - -
Gma04g02251 859 Gene3D - 98 381 IPR027417 -
Gma04g02251 859 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 651 706 IPR013083 -
Gma04g02251 859 Pfam Seven in absentia protein family 640 839 IPR018121 GO:0005737|GO:0006511|GO:0007275
Gma04g02251 859 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 469 IPR027417 -
Gma04g02251 859 CDD AAA 172 331 - -
Gma04g02251 859 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 708 839 IPR008974 GO:0005515
Gma04g02251 859 Gene3D - 382 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02251 Gma-Chr4 52913807 52924935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02251 566 846 C3H Transcription Factor Family AT2G41980 76.157 1.07e-160 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02251 K03544 - gmx:100810042 991.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02251 04 52913807 52924935 Gma06g01157 06 10897554 10900260 GST