LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma04g02210	ATGGGGCATTGCTGCAGCAAAAACATCGCCGTCAACAACGAGACGCTCCCCGCCGATCACGCCCCCAAGCCGCCGCATTACGCGGCGGCGGTGGCGGCTTCTCCGCTGCCGCCGTCGGGGAGCTCGGTCTCCGCCGCAACTCCCGGGAGGAACACGCCGGCGCAATCGTTTTCCATGAGCCCGTTCCCGAGTCCCCTCCCGGCGGGCATGGCGCCGTCGCCGGCGAGGACGCCTGGAAGGAAGTTCCGGTGGCCGCTGCCGCCGCCATCGCCGGCGAAGCCGATCATGGCGGCGTTGCTTCGGCGGCAGGGGAAGGCGAAGCCGAAGGAGGGGCCCATACCGGAGGAGCAGGGGGAGGGTGGCGGCGGCGAGGGTGAGAGGTCGCTCGATAAGAGCTTCGGTTATGGGAAGAATTTTGGGGCGAAGTTCGAGTTGGGGAAGGAAGTGGGTCGAGGGCATTTTGGTCATACGTGTTGGGCCAAAGGGAAGAAGGGTGACCTCAAGGGACAATCTGTTGCTGTTAAAATCATATCCAAAGCTAAGATGACTTCAGCAATTGCAATCGAAGATGTAAGGAGGGAGGTGAAAATGTTGAAAGCCTTATCTGGACATAAGAATTTGGTCAAGTTTTATGATGCATTTGAGGATGTCAACAACGTTTACATTGTTATGGAGTTGTGTGAGGGTGGAGAATTACTTGACAGAATTCTAGATAGAGGTGGAAGATACCCAGAGGATGACGCTAAAGCTATTCTTGTACAAATTCTAGATGTAGTTGCGTTTTGTCATCTACAAGGAGTAGTTCACCGTGATCTAAAACCAGAGAATTTTCTTTTTGTCTCGAAAGAAGAGGATGCTGTGATGAAAGTTATTGATTTTGGGCTATCTGATTTTGTTAGGCCAGATCAACGCCTCAATGACATTGTTGGCAGTGCCTACTACGTTGCACCTGAAGTGCTCCATAGATCTTACAGTGTTGAAGGAGACTTATGGAGTATTGGGGTTATATCATACATATTGTTATGTGGAAGTAGACCATTTTGGGCACGCACTGAATCAGGAATTTTCCGGTCTGTCTTGAGAGCGAATCCTAACTTTGATGATTCACCTTGGCCATCCATATCACCAGAAGCTAAAGACTTTGTGAAGAGACTTCTGAACAAGGACCACAGGAAAAGGATGACTGCTGCTCAAGCTTTAGCTCACCCATGGTTGAGAAACGAAAAAAATGCTATTCCTTTAGATATTTTGATATACAAGTTAGTAAAGTCATATGTGCGTGCCTCACCTTTGAGACGTGCAGCATTGAAGGCTCTTGCGAAAGCATTGACCGAAGACGAGCTAATATACCTTAGAGCGCAGTTTAACCTCTTGGAGCCTAAAGATGGCTGCATTTTACTTGAGAATTTTAGAGTTGCTCTCATGAAAAATGCAACTGATGCCATGAAGGAGTCAAGGGTCCCTGAAATTTTAAATTTGATGGAGCCACTCTCCTATAAAAAAATGGACTTCGAAGAGTTTTGCGCTGCTGCAATCAGTGTATATCAGCTTGAAGTTCATCAAGAATGGGATAGAATCGCTACCACAGCTTTTGAGTATTTTGAGGAAACAGGAAACCGGGTCATTTCAGTTGAGGAGTTGGCTCAGGAGATGAATTTGGTTCCATCAGCCTACTCTTTAATGGGTGATTGGATCAGAAAATCTGATGGAAAACTCAGCTTGGTCGGATATACAAAGTTTTTGCATGGTGTCACAATGCGTAGTTCAAATACAAGACACCGACAGCTAGTATAA	1794	0.4783	MGHCCSKNIAVNNETLPADHAPKPPHYAAAVAASPLPPSGSSVSAATPGRNTPAQSFSMSPFPSPLPAGMAPSPARTPGRKFRWPLPPPSPAKPIMAALLRRQGKAKPKEGPIPEEQGEGGGGEGERSLDKSFGYGKNFGAKFELGKEVGRGHFGHTCWAKGKKGDLKGQSVAVKIISKAKMTSAIAIEDVRREVKMLKALSGHKNLVKFYDAFEDVNNVYIVMELCEGGELLDRILDRGGRYPEDDAKAILVQILDVVAFCHLQGVVHRDLKPENFLFVSKEEDAVMKVIDFGLSDFVRPDQRLNDIVGSAYYVAPEVLHRSYSVEGDLWSIGVISYILLCGSRPFWARTESGIFRSVLRANPNFDDSPWPSISPEAKDFVKRLLNKDHRKRMTAAQALAHPWLRNEKNAIPLDILIYKLVKSYVRASPLRRAALKALAKALTEDELIYLRAQFNLLEPKDGCILLENFRVALMKNATDAMKESRVPEILNLMEPLSYKKMDFEEFCAAAISVYQLEVHQEWDRIATTAFEYFEETGNRVISVEELAQEMNLVPSAYSLMGDWIRKSDGKLSLVGYTKFLHGVTMRSSNTRHRQLV	597

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma04g02210	597	Gene3D	Phosphorylase Kinase; domain 1	137	232	-	-
	Gma04g02210	597	SUPERFAMILY	EF-hand	437	583	IPR011992	-
	Gma04g02210	597	PANTHER	CDPK-RELATED KINASE 3-LIKE ISOFORM X1	52	588	-	-
	Gma04g02210	597	CDD	STKc_CAMK	142	404	-	-
	Gma04g02210	597	Pfam	Protein kinase domain	143	405	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma04g02210	597	MobiDBLite	consensus disorder prediction	16	91	-	-
	Gma04g02210	597	Gene3D	-	444	512	-	-
	Gma04g02210	597	SMART	serkin_6	143	405	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma04g02210	597	PANTHER	SERINE/THREONINE-PROTEIN KINASE	52	588	-	-
	Gma04g02210	597	ProSitePatterns	Protein kinases ATP-binding region signature.	149	175	IPR017441	GO:0005524
	Gma04g02210	597	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	267	279	IPR008271	GO:0004672\|GO:0006468
	Gma04g02210	597	MobiDBLite	consensus disorder prediction	103	126	-	-
	Gma04g02210	597	MobiDBLite	consensus disorder prediction	103	131	-	-
	Gma04g02210	597	Gene3D	-	423	552	-	-
	Gma04g02210	597	SUPERFAMILY	Protein kinase-like (PK-like)	142	426	IPR011009	-
	Gma04g02210	597	MobiDBLite	consensus disorder prediction	37	62	-	-
	Gma04g02210	597	Gene3D	Transferase(Phosphotransferase) domain 1	233	422	-	-
	Gma04g02210	597	ProSiteProfiles	Protein kinase domain profile.	143	405	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma04g02210	Gma-Chr4	52501956	52512131	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma04g02210	1	588	EF-hand Containing Proteins	AT3G50530	58.176	0.0	724

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Gma04g02210		Pkinase	1.5e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma04g02210	-		-	gmx:100803631	1100.89