Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02197 ATGTCACAGCCAAGGCAAAATAAGATGATGAGTCCAAACCTTGCAAAACAAGTTGGTGACGCAACCTATACCAAGATTTTTGTTGGAGGACTGGCTTGGGGGACTAAGAGAGACACTCTAAAACGCTATTTTGATCAGTTTGGGGAGATCTTAGAGGCCGTTGTCATCACTGACAAAATCACTGGAAGATCAAAAGGATATGGCTTTGTGACCTTCAGGGACCCAAATTCTGCAATAAGAGCTTGTCATAATCCCTATCCTGTGATCGATGGGAGGAGAGCTAACTGTAATCTTGCAGCTCTTGGTGCCCAGAAATTTGATCCATCTATAACAGGAAGGCAAAAACTCAGTAGCCCGTCATGGAATATGGCACCAATTCCATTGCAAGGCACTTCCACTTATTATAACCAGCACATACCCCACTATCCATTTCCGTATCCAGCCTACAGGTATCCTGGTTATCCTCACCCACAAGACTTGTATGAAATGAACTACAATAATGCATATGGTGGACAGCAGCTTCCACTCCGTTGGTTGCCAGCATATTGCCAACCCTTTTATGGCCTTGGTAGACAGTTTATTCCAACAGCATATGTGAAAAAGGCACAAACCCCCAACATGTCACCTCAGGAGTTCACAGTCGTTGGCTTCTCAGAACCTATTTCAGCTTCTCCCTCAATTTCCAGCACTGGATTAGACACAGGAACAGTACCTGCAACAGGAGTGCTAGAATCCCCCCAAGAACAGAAGTCTTCAACTTAA 762 0.4462 MSQPRQNKMMSPNLAKQVGDATYTKIFVGGLAWGTKRDTLKRYFDQFGEILEAVVITDKITGRSKGYGFVTFRDPNSAIRACHNPYPVIDGRRANCNLAALGAQKFDPSITGRQKLSSPSWNMAPIPLQGTSTYYNQHIPHYPFPYPAYRYPGYPHPQDLYEMNYNNAYGGQQLPLRWLPAYCQPFYGLGRQFIPTAYVKKAQTPNMSPQEFTVVGFSEPISASPSISSTGLDTGTVPATGVLESPQEQKSST 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02197 253 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 253 - -
Gma04g02197 253 PANTHER BOULE-RELATED 1 253 IPR037366 GO:0003729
Gma04g02197 253 Gene3D - 1 111 IPR012677 -
Gma04g02197 253 SMART rrm1_1 25 97 IPR000504 GO:0003723
Gma04g02197 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Gma04g02197 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 82 IPR000504 GO:0003723
Gma04g02197 253 MobiDBLite consensus disorder prediction 223 253 - -
Gma04g02197 253 SUPERFAMILY RNA-binding domain, RBD 9 99 IPR035979 GO:0003676
Gma04g02197 253 CDD RRM_RBM24_RBM38_like 24 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02197 Gma-Chr4 52411657 52413420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02197 8 100 C2H2 Transcription Factor Family AT2G19380 39.785 7.55e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02197 - - gmx:100788634 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02197 04 52411657 52413420 Gma06g01213 06 11403335 11404881 GST