Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02196 ATGGCGGTTGCTGAGAATGTTGGGGCCAAAATCGGTTCTTCCAGTCAAAATTTGGAAAACAATGTAGTGTCATCGAACTCAGGCGAGGTTGAGAAATCAAAACCCAGAAGTGGGTCCATCAACGACGATCAGAAGCTGAACAACGGTGTCTTCAACCACCAAGATAGAGTTCCTGGCACTATGCCAGTGCCCAATAGCAATTATAACTACGAGGCCCAAATGGGTCAGATGCACACAAATGGGGTGAACAATGATGGGTATGGAATGAATGGGGTCATTTGTGGGGAGAATGGGGGTGAGAGTTTCAAGCGTGATATGAGGGATTTGGAAGAGCTTTTGTCAAAGTTGAATCCCATGGCTGAGGAATTTGTGCCCCCATCACTAACCAATACTCATGGCTACCTACCTGGACCTGGTGCCGGTGCTGGTGCCGGGTTTGGTTACCCTAATAATTTTATACTGCTCAATAACTTTGGTGATGCTAACGGTCAAACTAACAGAAGGAGGAAGAATGGCTATAATCATGGGAAGCGAAGAGTGAATCATAAAATGGATATGGAGAAGAGAGAAGAGATGATTAGGAGGACTGTTTATGTGTCAGACATTGATCAACTGGTTACTGAAGAGCAGTTGGCGGGGCTCTTTCTTAACTGTGGCCAGGTCGTTGATTGCCGTGTTTGTGGGGATCCTAATTCTATTCTGAGGTTTGCCTTCGTTGAGTTTACAGATGAAGATGGTGCAAGGGCTGCTTTGAACCTGTCTGGAACCATGCTTGGATATTACCCGTTGAGAGTACTACCTTCGAAAACTGCTATTGCCCCTGTTAATCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGTTCAAGAACAATTTATTGCACAAATATTGACAAGAAGCTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGGTTCAACGGTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCTTTTGTTGAGTTCACAGTGGCTGAGAGTGCAATTGCAGCTCTAAGCTGTAGTGGGGTGATTTTGGGTTCACTGCCCATAAGGGTAAGTCCATCGAAGACACCAGTTCGTTCACGTGCTCCTCGTCCTTCTATGCACTGA 1143 0.4514 MAVAENVGAKIGSSSQNLENNVVSSNSGEVEKSKPRSGSINDDQKLNNGVFNHQDRVPGTMPVPNSNYNYEAQMGQMHTNGVNNDGYGMNGVICGENGGESFKRDMRDLEELLSKLNPMAEEFVPPSLTNTHGYLPGPGAGAGAGFGYPNNFILLNNFGDANGQTNRRRKNGYNHGKRRVNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAGLFLNCGQVVDCRVCGDPNSILRFAFVEFTDEDGARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFTVAESAIAALSCSGVILGSLPIRVSPSKTPVRSRAPRPSMH 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02196 380 CDD RRM1_CID8_like 193 272 IPR034823 -
Gma04g02196 380 Pfam Ataxin-2 C-terminal region 113 127 IPR009818 -
Gma04g02196 380 CDD RRM2_CID8_like 288 369 IPR034825 -
Gma04g02196 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 361 IPR000504 GO:0003723
Gma04g02196 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 260 IPR000504 GO:0003723
Gma04g02196 380 Gene3D - 157 272 IPR012677 -
Gma04g02196 380 Gene3D - 279 374 IPR012677 -
Gma04g02196 380 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 380 - -
Gma04g02196 380 MobiDBLite consensus disorder prediction 9 59 - -
Gma04g02196 380 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 380 - -
Gma04g02196 380 SUPERFAMILY RNA-binding domain, RBD 167 271 IPR035979 GO:0003676
Gma04g02196 380 MobiDBLite consensus disorder prediction 1 59 - -
Gma04g02196 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 368 IPR000504 GO:0003723
Gma04g02196 380 SMART rrm1_1 196 266 IPR000504 GO:0003723
Gma04g02196 380 SMART rrm1_1 293 364 IPR000504 GO:0003723
Gma04g02196 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 270 IPR000504 GO:0003723
Gma04g02196 380 SUPERFAMILY RNA-binding domain, RBD 283 374 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02196 Gma-Chr4 52400816 52406699 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02196 194 363 Eukaryotic Initiation Factors Gene Family AT1G34140 25.862 7.15e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02196 - - gmx:100788102 749.584