Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02195 ATGAGCGGTCGCTTTTCTCGCACAATTTATGTCGGCAACCTGCCCTCTGATATAAGAGAGTCAGAAATTGAAGATCTATTCTACAAGTATGGCCGTATAATGGATATTGAATTGAAGGTTCCTCCCCGTCCTCCATGTTATTGCTTTGTTGAGTTTGATAATGCTCGAGATGCCGAAGATGCAATTCGGGGTCGAGATGGATACAACTTTGATGGTTGTCGGTTAAGAGTGGAGCTTGCTCATGGTGGTAGAGGGCCATCATCAAGTGATCGACGTGGATATGGAGGAGGAGGTGGTAATGGTGGAGCAGGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTTCGTGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGGTATCAAAGTGTTCATACTTATACACTTTACTAAAATTGTTACCACCTCTATATGTTATGAATATTTGGTTTCAGGATCATATGCGAAAAGCTGGTGACGTGTGCTTTGCTGAGGTTTCCCGTGATAGTGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCCATTCGGAAATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTATATTCGGGTGAGGAAGTATGAGAGTAGTCGTTCTaggagccgcagcaggagccccagcaggagcAGAAGTCCAAAAAGAGTTAGAAGTAGATCTCTGGAGCGTTCTGTGTCTAGGTCACGATCTAGATCTCAATCAGCATCACCAATCAAATCTTCTAGGCCAAGATCACGATCACGATCTGGATCTGGATCTCCTCATCAGGTCCTGTCAGTTATGGTAGAGGAGTGCGTAGGGGCGGATGTGGATGGCGGCACAGTGATGGTGGATAGCAGCTCCCATAAAAAAAGCGGACATGGAATATTCCTCCAACGATACAAGCACTCACAGAGACAGGCACAGAGCACAAGCCCGAGGATGCTAAACAAAGACACCAGATCATACAACAGAAATAACACAAACCCAGAAGACCCCACAAAACCCAGATTCACTGAAAAACCTCGAAGCGGAGAAAAAAGGCAACAACTTTTCATCTCTACGCAAGTGGTTATGGCGGTTGCTGAGAATGTTGGGGCCAAAATCGGTTCTTCGAGCCAGAGCTTGGAGAACGGGTTAGTGTCGGCGGATTCGGGTGAGGTTGAGAAATCGAAAACCAGAGGCGATCAGAATCTGAACAACGGCGTTTTCAACCATCAAGAGAGAGTTCCCGGTACCATGCCAGTTCCTAACGGCAATTTCAGCTACAAGGCTCAGATGCACGCAAATGGGGTGAACAATGATGGGTATgggatgaatggggtgacgagtggggagaatgggggtgagagtTTCAAGCGTGATATGAGGGATTTGGAAGAGCTTTTGTCAAAGTTGAACCCCATGGCTGAGGAATTTGTACCTCCATCACTAGCCAATACTCATGGCTTTTTAGCTGGACCTAATGCTGGGTTTGGTTACACTAACAATATTATACTGCCTACTAACTATGGAAATACTAATGGTCAAACTAACAACAGAAGGAGGAAGAATGGCTATAATCCTGGGAAGCGAAGAATGAATAATAAAATGGATATGGAGAAAAGGGAGGAGATGATTCGGAGAACAGTTTATGTGTCTGACATTGATCAACTGGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCTTCGTTGAGTTCACAGATGAAGAAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCATTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATCGACAAGAAGCTTACTCAAGCAGATGTCAAACACTTCTTCGAATCTATTTGCGGAGAGGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCATGCACTGA 2229 0.4397 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGNGGAGGGRFGISRHSEFRVIVRGLPSSASWQDLKVSKCSYLYTLLKLLPPLYVMNIWFQDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYESSRSRSRSRSPSRSRSPKRVRSRSLERSVSRSRSRSQSASPIKSSRPRSRSRSGSGSPHQVLSVMVEECVGADVDGGTVMVDSSSHKKSGHGIFLQRYKHSQRQAQSTSPRMLNKDTRSYNRNNTNPEDPTKPRFTEKPRSGEKRQQLFISTQVVMAVAENVGAKIGSSSQSLENGLVSADSGEVEKSKTRGDQNLNNGVFNHQERVPGTMPVPNGNFSYKAQMHANGVNNDGYGMNGVTSGENGGESFKRDMRDLEELLSKLNPMAEEFVPPSLANTHGFLAGPNAGFGYTNNIILPTNYGNTNGQTNNRRRKNGYNPGKRRMNNKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEEGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYHHSTRIAFVEFALAESAIAALSCSGVILGSLPIRVSPSKTPVRPRAPRPPMH 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02195 742 MobiDBLite consensus disorder prediction 520 542 - -
Gma04g02195 742 CDD RRM1_SF2_plant_like 8 79 - -
Gma04g02195 742 SUPERFAMILY RNA-binding domain, RBD 528 633 IPR035979 GO:0003676
Gma04g02195 742 MobiDBLite consensus disorder prediction 316 362 - -
Gma04g02195 742 Gene3D - 116 218 IPR012677 -
Gma04g02195 742 MobiDBLite consensus disorder prediction 81 101 - -
Gma04g02195 742 SMART rrm1_1 8 78 IPR000504 GO:0003723
Gma04g02195 742 SMART rrm1_1 655 726 IPR000504 GO:0003723
Gma04g02195 742 SMART rrm1_1 558 628 IPR000504 GO:0003723
Gma04g02195 742 SMART rrm1_1 149 211 IPR000504 GO:0003723
Gma04g02195 742 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 656 722 IPR000504 GO:0003723
Gma04g02195 742 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Gma04g02195 742 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 205 IPR000504 GO:0003723
Gma04g02195 742 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 559 622 IPR000504 GO:0003723
Gma04g02195 742 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 654 730 IPR000504 GO:0003723
Gma04g02195 742 CDD RRM1_CID8_like 555 634 IPR034823 -
Gma04g02195 742 Gene3D - 2 115 IPR012677 -
Gma04g02195 742 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 374 742 - -
Gma04g02195 742 MobiDBLite consensus disorder prediction 317 348 - -
Gma04g02195 742 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 557 632 IPR000504 GO:0003723
Gma04g02195 742 SUPERFAMILY RNA-binding domain, RBD 645 736 IPR035979 GO:0003676
Gma04g02195 742 Pfam Ataxin-2 C-terminal region 478 492 IPR009818 -
Gma04g02195 742 MobiDBLite consensus disorder prediction 218 278 - -
Gma04g02195 742 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Gma04g02195 742 SUPERFAMILY RNA-binding domain, RBD 6 109 IPR035979 GO:0003676
Gma04g02195 742 SUPERFAMILY RNA-binding domain, RBD 157 230 IPR035979 GO:0003676
Gma04g02195 742 CDD RRM2_SF2_plant_like 116 216 - -
Gma04g02195 742 Gene3D - 519 634 IPR012677 -
Gma04g02195 742 Gene3D - 642 736 IPR012677 -
Gma04g02195 742 MobiDBLite consensus disorder prediction 249 278 - -
Gma04g02195 742 CDD RRM2_CID8_like 650 730 IPR034825 -
Gma04g02195 742 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 374 742 - -
Gma04g02195 742 MobiDBLite consensus disorder prediction 399 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02195 Gma-Chr4 52367146 52381321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02195 556 725 Eukaryotic Initiation Factors Gene Family AT1G34140 25.287 1.27e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02195 - - gmx:100787572 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02195 04 52367146 52381321 Gma06g01214 06 11430683 11436027 GST