Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma04g02195 | ATGAGCGGTCGCTTTTCTCGCACAATTTATGTCGGCAACCTGCCCTCTGATATAAGAGAGTCAGAAATTGAAGATCTATTCTACAAGTATGGCCGTATAATGGATATTGAATTGAAGGTTCCTCCCCGTCCTCCATGTTATTGCTTTGTTGAGTTTGATAATGCTCGAGATGCCGAAGATGCAATTCGGGGTCGAGATGGATACAACTTTGATGGTTGTCGGTTAAGAGTGGAGCTTGCTCATGGTGGTAGAGGGCCATCATCAAGTGATCGACGTGGATATGGAGGAGGAGGTGGTAATGGTGGAGCAGGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTTCGTGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGGTATCAAAGTGTTCATACTTATACACTTTACTAAAATTGTTACCACCTCTATATGTTATGAATATTTGGTTTCAGGATCATATGCGAAAAGCTGGTGACGTGTGCTTTGCTGAGGTTTCCCGTGATAGTGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCCATTCGGAAATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTATATTCGGGTGAGGAAGTATGAGAGTAGTCGTTCTaggagccgcagcaggagccccagcaggagcAGAAGTCCAAAAAGAGTTAGAAGTAGATCTCTGGAGCGTTCTGTGTCTAGGTCACGATCTAGATCTCAATCAGCATCACCAATCAAATCTTCTAGGCCAAGATCACGATCACGATCTGGATCTGGATCTCCTCATCAGGTCCTGTCAGTTATGGTAGAGGAGTGCGTAGGGGCGGATGTGGATGGCGGCACAGTGATGGTGGATAGCAGCTCCCATAAAAAAAGCGGACATGGAATATTCCTCCAACGATACAAGCACTCACAGAGACAGGCACAGAGCACAAGCCCGAGGATGCTAAACAAAGACACCAGATCATACAACAGAAATAACACAAACCCAGAAGACCCCACAAAACCCAGATTCACTGAAAAACCTCGAAGCGGAGAAAAAAGGCAACAACTTTTCATCTCTACGCAAGTGGTTATGGCGGTTGCTGAGAATGTTGGGGCCAAAATCGGTTCTTCGAGCCAGAGCTTGGAGAACGGGTTAGTGTCGGCGGATTCGGGTGAGGTTGAGAAATCGAAAACCAGAGGCGATCAGAATCTGAACAACGGCGTTTTCAACCATCAAGAGAGAGTTCCCGGTACCATGCCAGTTCCTAACGGCAATTTCAGCTACAAGGCTCAGATGCACGCAAATGGGGTGAACAATGATGGGTATgggatgaatggggtgacgagtggggagaatgggggtgagagtTTCAAGCGTGATATGAGGGATTTGGAAGAGCTTTTGTCAAAGTTGAACCCCATGGCTGAGGAATTTGTACCTCCATCACTAGCCAATACTCATGGCTTTTTAGCTGGACCTAATGCTGGGTTTGGTTACACTAACAATATTATACTGCCTACTAACTATGGAAATACTAATGGTCAAACTAACAACAGAAGGAGGAAGAATGGCTATAATCCTGGGAAGCGAAGAATGAATAATAAAATGGATATGGAGAAAAGGGAGGAGATGATTCGGAGAACAGTTTATGTGTCTGACATTGATCAACTGGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCTTCGTTGAGTTCACAGATGAAGAAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCATTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATCGACAAGAAGCTTACTCAAGCAGATGTCAAACACTTCTTCGAATCTATTTGCGGAGAGGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCATGCACTGA | 2229 | 0.4397 | MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGNGGAGGGRFGISRHSEFRVIVRGLPSSASWQDLKVSKCSYLYTLLKLLPPLYVMNIWFQDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYESSRSRSRSRSPSRSRSPKRVRSRSLERSVSRSRSRSQSASPIKSSRPRSRSRSGSGSPHQVLSVMVEECVGADVDGGTVMVDSSSHKKSGHGIFLQRYKHSQRQAQSTSPRMLNKDTRSYNRNNTNPEDPTKPRFTEKPRSGEKRQQLFISTQVVMAVAENVGAKIGSSSQSLENGLVSADSGEVEKSKTRGDQNLNNGVFNHQERVPGTMPVPNGNFSYKAQMHANGVNNDGYGMNGVTSGENGGESFKRDMRDLEELLSKLNPMAEEFVPPSLANTHGFLAGPNAGFGYTNNIILPTNYGNTNGQTNNRRRKNGYNPGKRRMNNKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEEGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYHHSTRIAFVEFALAESAIAALSCSGVILGSLPIRVSPSKTPVRPRAPRPPMH | 742 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma04g02195 | 742 | MobiDBLite | consensus disorder prediction | 520 | 542 | - | - | |
Gma04g02195 | 742 | CDD | RRM1_SF2_plant_like | 8 | 79 | - | - | |
Gma04g02195 | 742 | SUPERFAMILY | RNA-binding domain, RBD | 528 | 633 | IPR035979 | GO:0003676 | |
Gma04g02195 | 742 | MobiDBLite | consensus disorder prediction | 316 | 362 | - | - | |
Gma04g02195 | 742 | Gene3D | - | 116 | 218 | IPR012677 | - | |
Gma04g02195 | 742 | MobiDBLite | consensus disorder prediction | 81 | 101 | - | - | |
Gma04g02195 | 742 | SMART | rrm1_1 | 8 | 78 | IPR000504 | GO:0003723 | |
Gma04g02195 | 742 | SMART | rrm1_1 | 655 | 726 | IPR000504 | GO:0003723 | |
Gma04g02195 | 742 | SMART | rrm1_1 | 558 | 628 | IPR000504 | GO:0003723 | |
Gma04g02195 | 742 | SMART | rrm1_1 | 149 | 211 | IPR000504 | GO:0003723 | |
Gma04g02195 | 742 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 656 | 722 | IPR000504 | GO:0003723 | |
Gma04g02195 | 742 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 76 | IPR000504 | GO:0003723 | |
Gma04g02195 | 742 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 159 | 205 | IPR000504 | GO:0003723 | |
Gma04g02195 | 742 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 559 | 622 | IPR000504 | GO:0003723 | |
Gma04g02195 | 742 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 654 | 730 | IPR000504 | GO:0003723 | |
Gma04g02195 | 742 | CDD | RRM1_CID8_like | 555 | 634 | IPR034823 | - | |
Gma04g02195 | 742 | Gene3D | - | 2 | 115 | IPR012677 | - | |
Gma04g02195 | 742 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR | 374 | 742 | - | - | |
Gma04g02195 | 742 | MobiDBLite | consensus disorder prediction | 317 | 348 | - | - | |
Gma04g02195 | 742 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 557 | 632 | IPR000504 | GO:0003723 | |
Gma04g02195 | 742 | SUPERFAMILY | RNA-binding domain, RBD | 645 | 736 | IPR035979 | GO:0003676 | |
Gma04g02195 | 742 | Pfam | Ataxin-2 C-terminal region | 478 | 492 | IPR009818 | - | |
Gma04g02195 | 742 | MobiDBLite | consensus disorder prediction | 218 | 278 | - | - | |
Gma04g02195 | 742 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 82 | IPR000504 | GO:0003723 | |
Gma04g02195 | 742 | SUPERFAMILY | RNA-binding domain, RBD | 6 | 109 | IPR035979 | GO:0003676 | |
Gma04g02195 | 742 | SUPERFAMILY | RNA-binding domain, RBD | 157 | 230 | IPR035979 | GO:0003676 | |
Gma04g02195 | 742 | CDD | RRM2_SF2_plant_like | 116 | 216 | - | - | |
Gma04g02195 | 742 | Gene3D | - | 519 | 634 | IPR012677 | - | |
Gma04g02195 | 742 | Gene3D | - | 642 | 736 | IPR012677 | - | |
Gma04g02195 | 742 | MobiDBLite | consensus disorder prediction | 249 | 278 | - | - | |
Gma04g02195 | 742 | CDD | RRM2_CID8_like | 650 | 730 | IPR034825 | - | |
Gma04g02195 | 742 | PANTHER | POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE | 374 | 742 | - | - | |
Gma04g02195 | 742 | MobiDBLite | consensus disorder prediction | 399 | 427 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma04g02195 | Gma-Chr4 | 52367146 | 52381321 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma04g02195 | 556 | 725 | Eukaryotic Initiation Factors Gene Family | AT1G34140 | 25.287 | 1.27e-09 | 59.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma04g02195 | - | - | gmx:100787572 | 730.324 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma04g02195 | 04 | 52367146 | 52381321 | Gma06g01214 | 06 | 11430683 | 11436027 | GST |