Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02192 ATGGATTCCGGTGTCCAGGGTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCTTACTGGCCCAGCCTCTTCGCCAAGCTCGCCCAGAATAAGAACATCGAAGACCTCATTTTGAAcgccggcggtggtggggccgccgttgcagttgccgctcccgccggcggtggtggtggtgccgctgctgcagccgcacccgccgCCGAGGAAAAGAAGGAAGAAGTGAAGGAAGAAAGTGACGATGACATGGGTTTCGGCTTGTTTGATTAG 333 0.3664 MDSGVQGCILATLILHDEEIPVTAEKINALLKASNVSAESYWPSLFAKLAQNKNIEDLILNAGGGGAAVAVAAPAGGGGGAAAAAAPAAEEKKEEVKEESDDDMGFGLFD 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02192 110 MobiDBLite consensus disorder prediction 88 104 - -
Gma04g02192 110 Gene3D - 5 63 IPR038716 -
Gma04g02192 110 CDD Ribosomal_P1 6 109 - -
Gma04g02192 110 Pfam 60s Acidic ribosomal protein 22 109 - -
Gma04g02192 110 PRINTS Ribosomal protein P2 signature 25 36 IPR001859 GO:0003735|GO:0005840|GO:0006412
Gma04g02192 110 PRINTS Ribosomal protein P2 signature 82 96 IPR001859 GO:0003735|GO:0005840|GO:0006412
Gma04g02192 110 PRINTS Ribosomal protein P2 signature 97 108 IPR001859 GO:0003735|GO:0005840|GO:0006412
Gma04g02192 110 Hamap 50S ribosomal protein L12 [rpl12]. 6 110 IPR027534 GO:0003735|GO:0005840|GO:0006414
Gma04g02192 110 MobiDBLite consensus disorder prediction 76 110 - -
Gma04g02192 110 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 110 - -
Gma04g02192 110 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATED 1 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02192 Gma-Chr4 52351521 52353205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02192 1 110 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 51.327 3.70e-34 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02192 K02942 - gmx:100801741 150.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02192 04 52351521 52353205 Gma06g01216 06 11455408 11457067 GST