Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02185 ATGGGAGAGGTGGTCATCATGAGTGGAGAGAAGAAGTCAGTTAGAGTGGAGGGGGTGGAGAAGGAAGATAGTGGTGGAAGTGGGAGCAAGGCTGGTGAATTTAAGGGGTTGATGAGGTGGGAGAAGTTCTTGCCCAAGATGGTTTTGAGGGTGCTGTTGGTTGAAGCAGATGATTCCACAAGACAAATTATTGCCGCGCTTCTCAGAAAATGCAGCTACAAAGTGGTTGCTGTTCCTGATGGCTTGAAGGCATGGGAATTACTCAAGGGAAGACCGCACAATGTTGATCTAATTCTGACAGAAGTGGATTTGCCATCCATATCTGGCTATGCACTTCTCACATTAATTATGGAGCACGAGATTTGCAAAAACATCCCTGTTATAATGATGTCTTCCCAAGATTCAATTAGCACAGTATACAAATGCATGTTGAGAGGTGCTGCTGATTATCTTGTTAAGCCTATTAGAAAAAATGAACTGAGGAACTTGTGGCAACATGTTTGGAGAAGACAATCATCAACCACTGGTATTAATGGCCTCCAAGATGAGAGTGTTGCACAACAGAAGGTTGAAGCCACTGCAGAAAATAATGCTGCTAGTAATCGTTCAAGTGGTGATGCTGCTTGCATTCAGAGAAATATAGAACTAATTGAGAAGGGAAGTGATGCACAGAGCTCTTGTACCAAGCCTGACTGTGAAGCTGAGAGTGACCCTGTCGGTAACATGCAGGAATTTTCTCTGCTGAAATGTGGGGAAGCATATCCAAGTGGAACAGAGACACAACAGGTTGAAACAAGCTTTCGCTTAGGCCAGACATTAATGATGCATGACTGTCATGCTGGAGGATTAAATGTGAGTATCCGCAAAAATGGTGAGGCAAGCACGACTAATGACAAGGATACTGATACAGAGCATTTTGGGAATGCTAGCATCAGTGGTGAGGCTCATGACAATCCCTATGTTCAAATTAACTCTTCCAAGGAAGCTATGGACTTGATTGGAGCATTTCATACTCATCCAAACTGTTCCCTGAAAAATTCCACAGTTAATTGCACAGGCAACTTTGACCATTCTCCTCAATTGGATCTTTCTTTGAGAAGATCTTGTCCCGGAAGCTTTGAGAATAAACTCACTGAAGAAAGGCACACCCTGATGCATTCTAATGCTTCAGCTTTCAAGCGGTATACTACCAGGCAATTGCAAATATCAATGCCTGCAGTGTTAATTAACTTCTCTGATCAACAAAGAGAACAGATAACAAATTGTGAGAAAAACATCTCACACATCGCTACTGGCAGCAACTCAGATAGTTCAACACCTATGCAAAGATGTATTGTGTCTCCAACTACAGTCCAATCAAAAGAATCTGAACTTGCAACCTCACACCCCCCGCAAGGACATTCTCTCCCAATTCCAGTAAAGGGTGTAAGGTTCAATGATCTATGCACAGCCTATGGTTCTGTACTTCCTTCAGTGTTTCATACACAGTCAGGTCCACCAGCAATGCCAAGTCCAAATTCAGTTGTGCTCCTTGAACCAAACTTTCAAGTAAATGCATTTTATCAGTCAAATATGAAAGAGAGTAGTTCAGAGCAGCTTTATGAATCTCGTGGTCCAAATGGAAACACCACCCAAAACCACATTGTGTACACACAGGAGCACAAATCAGAACATGCAGAAGATCGAGGACATATCTCTCCTACAACTGATCAAAGTGTGTCAAGTAGTTTCTGCAATGGAAATGCAAGCCATCTTAACAGCATTGGTTATGGAAGCAACTGTGGAAGTAGCAGCAATGTTGATCAAGTTAACACTGTTTGGGCAGCTTCAGAGGGAAAGCATGAAGACCTCACAAATAATGCAAACTCTCATCGATCTATCCAAAGAGAAGCAGCTCTAAACAAATTTCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGGTTCGATACGAGAGCAGAAAAAAACTAGCAGAGCAGCGTCCCAGAGTTAAAGGACAATTTGTTCGTCAAGTGCATCCTGATCCTCTTGTTGCAGAAAAAGATGGCAAAGAATATGATCATTCAGATTTCTGA 2076 0.4234 MGEVVIMSGEKKSVRVEGVEKEDSGGSGSKAGEFKGLMRWEKFLPKMVLRVLLVEADDSTRQIIAALLRKCSYKVVAVPDGLKAWELLKGRPHNVDLILTEVDLPSISGYALLTLIMEHEICKNIPVIMMSSQDSISTVYKCMLRGAADYLVKPIRKNELRNLWQHVWRRQSSTTGINGLQDESVAQQKVEATAENNAASNRSSGDAACIQRNIELIEKGSDAQSSCTKPDCEAESDPVGNMQEFSLLKCGEAYPSGTETQQVETSFRLGQTLMMHDCHAGGLNVSIRKNGEASTTNDKDTDTEHFGNASISGEAHDNPYVQINSSKEAMDLIGAFHTHPNCSLKNSTVNCTGNFDHSPQLDLSLRRSCPGSFENKLTEERHTLMHSNASAFKRYTTRQLQISMPAVLINFSDQQREQITNCEKNISHIATGSNSDSSTPMQRCIVSPTTVQSKESELATSHPPQGHSLPIPVKGVRFNDLCTAYGSVLPSVFHTQSGPPAMPSPNSVVLLEPNFQVNAFYQSNMKESSSEQLYESRGPNGNTTQNHIVYTQEHKSEHAEDRGHISPTTDQSVSSSFCNGNASHLNSIGYGSNCGSSSNVDQVNTVWAASEGKHEDLTNNANSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVHPDPLVAEKDGKEYDHSDF 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02185 691 ProSiteProfiles CCT domain profile. 629 671 IPR010402 GO:0005515
Gma04g02185 691 MobiDBLite consensus disorder prediction 289 315 - -
Gma04g02185 691 SUPERFAMILY CheY-like 49 177 IPR011006 -
Gma04g02185 691 MobiDBLite consensus disorder prediction 675 691 - -
Gma04g02185 691 MobiDBLite consensus disorder prediction 554 574 - -
Gma04g02185 691 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 12 664 - -
Gma04g02185 691 ProSiteProfiles Response regulatory domain profile. 50 168 IPR001789 GO:0000160
Gma04g02185 691 Pfam CCT motif 629 671 IPR010402 GO:0005515
Gma04g02185 691 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 664 IPR045279 GO:0009736
Gma04g02185 691 SMART REC_2 49 164 IPR001789 GO:0000160
Gma04g02185 691 Pfam Response regulator receiver domain 51 162 IPR001789 GO:0000160
Gma04g02185 691 MobiDBLite consensus disorder prediction 657 691 - -
Gma04g02185 691 MobiDBLite consensus disorder prediction 449 463 - -
Gma04g02185 691 MobiDBLite consensus disorder prediction 449 468 - -
Gma04g02185 691 Gene3D - 47 234 - -
Gma04g02185 691 CDD psREC_PRR 51 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02185 Gma-Chr4 52307866 52313152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02185 19 673 Response Regulator Gene Family AT5G24470 40.602 2.21e-126 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Gma04g02185 Response_reg 5.1e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02185 K12130 - gmx:100784383 1302.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02185 04 52307866 52313152 Gma06g01222 06 11488476 11492974 GST