Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02171 ATGGGTTCGGTGGACTGTTATCCGTCTCGTGTGGACGATGCGGCCGTGGTGTCTCTAGATTCGCTGCCGTTAGGGTTCCGATTCCGACCTACCGACGAGGAACTCGTCAATTACTACCTGCGACAGAAGATCAACGGTAATGGTCGCGAGGTTTGGGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCGgtttgtcggtggtacagactaaggatccggagtggttcttcttctgtccacaggaccgaaagtatccaaatgggcatcgattgaacagagcgacgaataatgggtattggaaggcgacggggaaggatcgtaaaatcaagtctgggacgattttgattggaatgaagaagactttggtgttctacactggtcgagcacccaaggggaataggaccaattgggttatgcatgagtatcgccccactttgaaggagcttgatggtaccaatcctggacagAATCCATATGTCCTTTGTCGCTTGTTTAAGAAACATGATGAGAGCCTTGAAGTTTCACACTGTGATGAAGCAGAGCCGACTGCTTCCACTCCTGTGGCTGCCTATTACTCCACAGAGGAAATACAATCTGATCTGGCTGTTGTTGCAGGATCGCCGTCACAAGTTACAGAAGATGATAAGCATCAGTCAATGATCCCTGCACACTCTGAGGAAGCAATATCCAATGTTGTAACCCCGGTTGATCGCTGTACTGATGGATATGATGCTTGTGATGCACAAAATCAAATTGAGTTACCAACTGCGGAGGAGTTTCAACCATTGAACTTTGATATATATTATGATGACCCAAGAAGCGAGCTACTGGATGGCAAATTATTCTCCCCTGTACTTGCACATATTCAACCAGAATTTCATTATCAAGCAAACATCGAATCAGATGGTCGATATGGGCTTCAATATGGTACAAATGAGACAAACATGTCAGACTTTTTGAATTCAGTTGTTAACTGGGATCAAGTACCCTTTGAGGATCCCAATTGTCAACAGCAGAGCTACCCCTTGTTTAATGTTAAGGATAACATATTAAACAGCGACTTAGATTCTGAACTTGCCAATATGACATGTATGCAAGCTGGTTATGCGGAGGGGGCAATTGATGGAAGGATTCCTTTGTTGATAACTTCAGAATTTTGCAGCACCACTGGAATCCCCGTTGACTGTGTTGGTGACGAGCAGAAAAGCAATGTTGGGTTATTTCAAAACAATTCCCAGAGAGCTTTTACTGATGTTAATATGGGTCAAGTATACAATGTAGTCGATGATTATGAGCAACAAAGAATCTGTAGTGCAGTTGCTAGTGGCAATACTGGAATCATAAGGAGGCATCGTGAGGTACGAAATGAACAGCTAAGCATAAACTCAACACAAGGTACTGCACAGAGGAGAATTCGTTTGTCAATGGCTACACATGGCTCAAATAAGACGGTGAAAAGTGAAAGTTGTGCACAAGAAGAGCTTTATGCAAAACCAGTCATTGCTGTGGGGGAGAAAGGTTCAGAAAATCATGCTTCTGATGAAAGTGCTACTCTTACTAATGATGGGAATGAACTGCAGAAGACACCCGAGTCAACCGGCAAAAGAAAGATTTCTCAACAAGTTACAAAAGCAGGCTCCACCTTGGGGTTGAAAGATCTTTTCTTGCTCAGAAGGGTCCCTCACATTTCAAAGGCTTCCTCAAATCGCACCAAGTGCTCTTCTGTTTTTGTACTTTCTGCCTTTGTAATGGTCTCATTAGTGGTCTTTACTGACATTTGGGGATATCTTAAATTTTAA 1815 0.3647 MGSVDCYPSRVDDAAVVSLDSLPLGFRFRPTDEELVNYYLRQKINGNGREVWVIREIDVCKWEPWDMPGLSVVQTKDPEWFFFCPQDRKYPNGHRLNRATNNGYWKATGKDRKIKSGTILIGMKKTLVFYTGRAPKGNRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKHDESLEVSHCDEAEPTASTPVAAYYSTEEIQSDLAVVAGSPSQVTEDDKHQSMIPAHSEEAISNVVTPVDRCTDGYDACDAQNQIELPTAEEFQPLNFDIYYDDPRSELLDGKLFSPVLAHIQPEFHYQANIESDGRYGLQYGTNETNMSDFLNSVVNWDQVPFEDPNCQQQSYPLFNVKDNILNSDLDSELANMTCMQAGYAEGAIDGRIPLLITSEFCSTTGIPVDCVGDEQKSNVGLFQNNSQRAFTDVNMGQVYNVVDDYEQQRICSAVASGNTGIIRRHREVRNEQLSINSTQGTAQRRIRLSMATHGSNKTVKSESCAQEELYAKPVIAVGEKGSENHASDESATLTNDGNELQKTPESTGKRKISQQVTKAGSTLGLKDLFLLRRVPHISKASSNRTKCSSVFVLSAFVMVSLVVFTDIWGYLKF 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02171 604 MobiDBLite consensus disorder prediction 518 546 - -
Gma04g02171 604 SUPERFAMILY NAC domain 17 172 IPR036093 GO:0003677|GO:0006355
Gma04g02171 604 Gene3D NAC domain 31 176 IPR036093 GO:0003677|GO:0006355
Gma04g02171 604 Pfam No apical meristem (NAM) protein 23 148 IPR003441 GO:0003677|GO:0006355
Gma04g02171 604 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 17 465 - -
Gma04g02171 604 ProSiteProfiles NAC domain profile. 22 172 IPR003441 GO:0003677|GO:0006355
Gma04g02171 604 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 17 465 - -
Gma04g02171 604 MobiDBLite consensus disorder prediction 512 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02171 Gma-Chr4 52157813 52161333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02171 15 206 NAC Transcription Factor Family AT4G35580 71.354 1.34e-94 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma04g02171 NAM 4.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02171 - - gmx:100777071 1226.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g01882 14 49483659 49487628 Gma04g02171 04 52157813 52161333 PCT
Gma02g02108 02 46878029 46882153 Gma04g02171 04 52157813 52161333 PCT
Gma04g02171 04 52157813 52161333 Gma14g01882 14 49483659 49487628 PCT
Gma04g02171 04 52157813 52161333 Gma02g02108 02 46878029 46882153 PCT