Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02158 ATGGAGACTCTGAAAGCTGCAATTCCAGAAAACCTGAAGCGAGCGATAGGGGATAGCGATGTCGATGACCTTCGCAGCACATGCTCTTCTCTTCACCGCTTCTTTCTCCACTTCCACCCATTTCACCAGATGATCACTGAACTCGCAGATCCAAAGAATGCTCTGTGCGCCAAGAACAAGGACGCTGCGTTGAAATCCAGGCTGCTTGGTAATCAGTGCTTCTCCAACGCAGATTATGCTAAGGCCTTGGACTGCTACACTCAGGCATTGCGCGAGGCTCCATTAGACACCGCCAGTGATATGGAGAGTAATCTTGTTGTTGCAACATTATATATCAATCGTGCTACTGTATTGCATAAAATGAGTCTTATAGTAGAATGCTTACGAGATTGCACTCGAGCTCTTCAAATTTGTCCAAGCTATGCTAAGGCATGGTACAGGAGAGGTAAGGCAAATGCTTCATTGGGAAATTATAAAAATGCAATTTGTGATCTAAATGTGGCTAAGAGTGTGGAACCTTCAATGGGTGGGAAGAGACAAATAGAAGGTGAACTGAAAATTCTTTTAGACCAATGCAAAAGCACGACTGCAGTAGAACAAATACAACATACAGAGAACAACTGCAATACTGTGGGTGAGATGCCTCACATAAAGCTACAGCGGGTCTCCACACCTGATAAAGGAAGAGGCATCGTGTCATCATGTGTCATTTCACCAGGTTCTTTGGTTCATGCTGAAGAACCTTATGCTATGATAATATTAAAGCAATGTCGGGAAACCCATTGCCATTATTGCTTGAACGACCTACCTGCTGATAGAGTTCCTTGTATATTGTGTTCAATACCATTGTATTGCTCCCACCAATGCCGGATACGGGCAACTGGGCAAATGTTCAAAATTTACCCAGAGTATAATGGCTTTTTCAAAAACTTACCCAGTGATCTTGGAGAATATGCTGCTGAAGTTATTCAATGCAATGATTCTGAACTGGAAATTGGGGATATTACTGAACATAAACATGAATGTCAAGGTGTACATTGGCCTATGGTACTTCCGTCTGAGATAGTTTTGGCTGGTCGAATCCTAGCTAGGTTTTTGCTAAATATCCCACCTGAAGATATTATAAACTTTGTGGAAAGGCTGGAGCTTTCTCATTGTTACAAACAAATGTCATCTGAAAGAAAGTTGGATTCACATATATATGCCGTTGTATTATTATATTGTCTTCAACACTCTTGTGGAATTATGTTTTCCATAGACGAAGTTTTCATATCACAGGTTGTTGTTATAATTATTTCTCAAATTAAAGTAAATTGTATGACTATCGTTCGTTTAAAATCAATAGACGCCCATGGACTATCAGGTCGCTTTGGAGAATTTCCATTTCAATCTGGTGCTCATTCAACTAGTAATGTGGAACAGGTCAGAGTGGGTAAAGCTATTTATAAAGCTGGCAGTTTATTCAACCATTCTTGCCAGCCAAATACTCATGCATATTTTCTTTCACGCACTCTTTATTTACGAACCACAAATGTTGTAGCAGCCGAGAGTCAACTAGAATTATCTTATGGTCCACAGGTTGGGTTGTGGGATTGTAAAGATCGCCTTAATTTTCTCAAAGACGAGTATGCATTTCTTTGTCAGTGTACTGGTTGTTCAGAAGTTAATCTATCTGACATTGTCCTCAATGCCTTCCATTGTGTCAATACAAATTGTTCTGGCACAGTGTTGGAAAGCAGAGTACATGACAGTGAGAAGCAGAAAATCAAGCACTTCCCTATTTCTGACCATGTTGACAAAAATGCTGACATTTATGAAGTATGTCTTCGTGTCTTCAAACAAAATGGTGCCTCTATTGATATTCAACCTGGATACTGTTTGAAATGTGGTTCTTACTGTGATTTGGAGTCTTCACGTGCTGCAGTCAGTAAAGCTTTAACATGCATAAAAAGGTTGCAGGATGCAATATTGTCACAACAAATTTCAAGTATTACTATTTCTGATGCTTTGAAATCTCTTCGATTGCTAAGATTAAATTTGCATGCATACAACAAGCTTATTGCAGAGGCAGAAGACAGCATTGCCCAGGCATTTTGTTTAGTGGGAGAATTACAATTATCTTTGGATCATTGTAAAGCATCTATCCAGATTCTGGAAAAGCTATATGATACTGATGATATTGTTATTGCATATGAACTTGTGAAGCTTTCTTCCATCCAACTTTCCTTGGGTGATGTCAGGACATATTGCCTCATAAATAAGAATGGGGCTTTGAACTCAGGTCAGTCAGGTGAGATCGATGCATAG 2307 0.3971 METLKAAIPENLKRAIGDSDVDDLRSTCSSLHRFFLHFHPFHQMITELADPKNALCAKNKDAALKSRLLGNQCFSNADYAKALDCYTQALREAPLDTASDMESNLVVATLYINRATVLHKMSLIVECLRDCTRALQICPSYAKAWYRRGKANASLGNYKNAICDLNVAKSVEPSMGGKRQIEGELKILLDQCKSTTAVEQIQHTENNCNTVGEMPHIKLQRVSTPDKGRGIVSSCVISPGSLVHAEEPYAMIILKQCRETHCHYCLNDLPADRVPCILCSIPLYCSHQCRIRATGQMFKIYPEYNGFFKNLPSDLGEYAAEVIQCNDSELEIGDITEHKHECQGVHWPMVLPSEIVLAGRILARFLLNIPPEDIINFVERLELSHCYKQMSSERKLDSHIYAVVLLYCLQHSCGIMFSIDEVFISQVVVIIISQIKVNCMTIVRLKSIDAHGLSGRFGEFPFQSGAHSTSNVEQVRVGKAIYKAGSLFNHSCQPNTHAYFLSRTLYLRTTNVVAAESQLELSYGPQVGLWDCKDRLNFLKDEYAFLCQCTGCSEVNLSDIVLNAFHCVNTNCSGTVLESRVHDSEKQKIKHFPISDHVDKNADIYEVCLRVFKQNGASIDIQPGYCLKCGSYCDLESSRAAVSKALTCIKRLQDAILSQQISSITISDALKSLRLLRLNLHAYNKLIAEAEDSIAQAFCLVGELQLSLDHCKASIQILEKLYDTDDIVIAYELVKLSSIQLSLGDVRTYCLINKNGALNSGQSGEIDA 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02158 768 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 753 - -
Gma04g02158 768 Gene3D SET domain 368 523 IPR046341 -
Gma04g02158 768 Gene3D Tetratricopeptide repeat domain 38 202 IPR011990 GO:0005515
Gma04g02158 768 ProSiteProfiles TPR repeat profile. 142 175 IPR019734 GO:0005515
Gma04g02158 768 Gene3D SET domain 230 260 IPR046341 -
Gma04g02158 768 Coils Coil 673 693 - -
Gma04g02158 768 Coils Coil 766 768 - -
Gma04g02158 768 SUPERFAMILY TPR-like 58 193 IPR011990 GO:0005515
Gma04g02158 768 ProSiteProfiles SET domain profile. 217 524 IPR001214 GO:0005515
Gma04g02158 768 Pfam SET domain 465 524 IPR001214 GO:0005515
Gma04g02158 768 Gene3D Tetratricopeptide repeat domain 529 749 IPR011990 GO:0005515
Gma04g02158 768 SUPERFAMILY SET domain 206 554 IPR046341 -
Gma04g02158 768 SMART tpr_5 688 721 IPR019734 GO:0005515
Gma04g02158 768 SMART tpr_5 142 175 IPR019734 GO:0005515
Gma04g02158 768 SMART tpr_5 108 141 IPR019734 GO:0005515
Gma04g02158 768 SMART tpr_5 63 96 IPR019734 GO:0005515
Gma04g02158 768 Gene3D - 261 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02158 Gma-Chr4 52067274 52078326 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gma04g02158 SET 5.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02158 K24634 - gmx:100794609 1451.8