Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02151 ATGGAATCGTCACCGTCCTCGTCGTCTTCTGGAAGCGACACCAgtggtggtggtggtggtggtggtggtggtggCGGCGGCGGCGCTGTCACGTGGTTCGGGATGAGTTTCCCATTCCGTTCTCCGCTCTCTCTCGTGATGGATTACTGCGTACGCGAGGATTCTGCGGAGCCTGTGATTATCATTCCCCGCACGCGCCCGCGTTTTCAGGCGCATGCCGAATCGGACGCTGCTTCGGCCTCTGATTCCGATGAGAATGCGTGCAACGGCGCTGCTGAGGAGGTTGCGATACGCATAATTGGGGTCGGCGAGCAGGAGAGCGGTTCATCGCCCTCATCGTCGAGGGGCCGGGGCGGGGAGCTGGGCGGTGAGGAGGCGGTGGTTGGGAGGAGCGGGATGCTGTCGTCTCGCCGGCGAATGGCGGAGGAGAGGGTGCCGTTGGTGTCTTTGGATGATGGGATTGTTGGCGCTAGGGATTCTTCTTCTTCATCATCGTCCTCTACTTACCAGAGGTATGATATTCAGCAGGTTGCGAAGTGGATTGAGCAGATTCTACCGTTTTCTCTCTTGTTGCTGATTGTTTTCATCCGCCAGCATTTGCAAGGTTTCTTTGTCACAATTTGTATATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAGGGAGATCGGAAAGTCTCTGTTCTTCTCGGTATCTCTTTTGCCTTTATGCTGCATGTGATAAGCATTTACTGGTGGTATCGAAATGATGATCTTTTATACCCACTGGCCATGCTTCCACCAAAAACACCGCCACCTTTCTGGCATACAATATTCATCATTTTGGTGAATGatacattgGTGCGGCAAGCAGCAATGGCTTTCAAATGTTTGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGGGTCAAATGTTAACTCTGGTCGAGTATACTCTGCTGCTGTATCGTGCCTTGTTGCCAACACCAGTTTGGTACCGATTTTTCTTGAACAAGGATTATGGAAGTCTCTTTTCCTCACTGACCACAGGATTGTATCTAACTTTCAAGCTAACATCAGTAGTTGAGAAGGTCCAGTGCTTCGTTTCTGCCTTAAAAGCATTATCAAAAAAGGAAGTTCATTATGGGGTTCATGCCACAACGGAACAGGTGAATGCTGCTGGTGACATGTGTGCTATATGCCAGGAGAAGATGCAGGCTCCCATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATGGTTTGAGAGAGAACGAACTTGTCCATTATGCAGGGCATTGGTAAAACCAGCTGATCTGCGGACCTTCGGAGATGGATCAACAAGTCTATTTTTTCAGTTGTTTTAA 1392 0.4756 MESSPSSSSSGSDTSGGGGGGGGGGGGGAVTWFGMSFPFRSPLSLVMDYCVREDSAEPVIIIPRTRPRFQAHAESDAASASDSDENACNGAAEEVAIRIIGVGEQESGSSPSSSRGRGGELGGEEAVVGRSGMLSSRRRMAEERVPLVSLDDGIVGARDSSSSSSSSTYQRYDIQQVAKWIEQILPFSLLLLIVFIRQHLQGFFVTICISAVMFKSNEIVKKQTALKGDRKVSVLLGISFAFMLHVISIYWWYRNDDLLYPLAMLPPKTPPPFWHTIFIILVNDTLVRQAAMAFKCLLLIYYKNGRGHNFRRQGQMLTLVEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQCFVSALKALSKKEVHYGVHATTEQVNAAGDMCAICQEKMQAPILLSCKHMFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02151 463 ProSiteProfiles Zinc finger RING-type profile. 402 440 IPR001841 -
Gma04g02151 463 MobiDBLite consensus disorder prediction 1 26 - -
Gma04g02151 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 376 450 IPR013083 -
Gma04g02151 463 SMART ring_2 402 439 IPR001841 -
Gma04g02151 463 Pfam Zinc finger, C3HC4 type (RING finger) 400 443 - -
Gma04g02151 463 MobiDBLite consensus disorder prediction 1 16 - -
Gma04g02151 463 ProSitePatterns Zinc finger RING-type signature. 417 426 IPR017907 -
Gma04g02151 463 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 1 463 IPR044235 GO:0061630|GO:1904294
Gma04g02151 463 CDD RING-HC_RNFT1_like 401 440 - -
Gma04g02151 463 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 463 - -
Gma04g02151 463 SUPERFAMILY RING/U-box 393 445 - -
Gma04g02151 463 MobiDBLite consensus disorder prediction 102 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02151 Gma-Chr4 51987745 51994485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02151 64 463 C3H Transcription Factor Family AT5G01960 67.750 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02151 - K22379 gmx:100816630 800.816