Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02149 ATGGGGAGGAggcctgcaaggtgttatcggcagataaaaaacaagccataccccaaatcacgcttttgccgtggtgttcctgatcctaagatcagaatttatgatgttggtatgaagaagaaaggtgttgatgagtttcccttctgtgttcatctggttagctgggaaaaagaaaatgtttcaagtgaagcattggaagctgcTAGAATTGCATGCAACAAATATATGGCGAAATTTGCTGGAAAAGATGCTTTCCACTTGAGAGTCCGAGTACATCCATTCCATGTTCTTAGGATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCATTTGGAAAGCCACAGGGAACATGTGCTAGAGTCGCCATTGGTCAGGTTCTTCTTTCTGTCCGCTGCAAGGACAGCAACAGTCATCATGCACAGGAGGCTCTTCGTCGTGCTAAGTTTAAGTTCCCTGGTCGTCAGAAGATCATAGTTAGCCGGAAATGGGGTTTCACCAAGTTTAGCCGTGCTGATTATCTCAAGTACAAGTCAGAGAGCAGGATTGTGCCTGATGGTGTGAATGCTAAGCTTCTTGGGTGCCATGGACCACTGGCAAACCGTCAACCAGGACAAGCTTTTCTATGTAGTGCTACTGCTACTGCTTAG 672 0.3333 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKYKSESRIVPDGVNAKLLGCHGPLANRQPGQAFLCSATATA 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02149 223 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Gma04g02149 223 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Gma04g02149 223 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 218 - -
Gma04g02149 223 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Gma04g02149 223 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Gma04g02149 223 Gene3D Ribosomal protein L10e/L16 1 218 IPR036920 GO:0003735|GO:0005840|GO:0006412
Gma04g02149 223 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Gma04g02149 223 PANTHER 60S RIBOSOMAL PROTEIN L10 1 218 IPR001197 GO:0003735|GO:0005840|GO:0006412
Gma04g02149 223 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02149 Gma-Chr4 51976313 51978864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02149 1 221 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 87.783 6.99e-145 401
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02086 02 46674397 46676770 Gma04g02149 04 51976313 51978864 PCT
Gma04g02149 04 51976313 51978864 Gma02g02086 02 46674397 46676770 PCT