Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02141 ATGGCTGCAAGTTCTTCTTCAAATTGGGTCATGGAAAGTGGTGATGTTCCTCATGTTTTGGCCGTTGATGACAACCTTATTGATCGCAAACTCGTTGAGAAACTCCTGAGGAATTCTTCTTGCAAAGTTACAACTGCAGAAAATGGGCCAAGGGCATTGGAGTTATTGGGCTTGACAAGTGGTGGACAGAACAACATGAACGGTAGATCCAAAGTAAATATGATAATCACAGACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATTAAGGAATCGTCTGTAATGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAAGTGTCTGGAAGAAGGAGCTCAGATGTTCATCCTAAAGCCCCTCAAACAATCTGATGTAAGAAAACTGACATCAGCACTCCAGAACCCTGCATTTGTCATGGCCGTCTTTTGCTAA 468 0.4274 MAASSSSNWVMESGDVPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALELLGLTSGGQNNMNGRSKVNMIITDYCMPGMTGYELLKKIKESSVMKEVPVVIMSSENIPTRINKCLEEGAQMFILKPLKQSDVRKLTSALQNPAFVMAVFC 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02141 155 Gene3D - 18 151 - -
Gma04g02141 155 ProSiteProfiles Response regulatory domain profile. 18 145 IPR001789 GO:0000160
Gma04g02141 155 SUPERFAMILY CheY-like 17 144 IPR011006 -
Gma04g02141 155 SMART REC_2 17 141 IPR001789 GO:0000160
Gma04g02141 155 Pfam Response regulator receiver domain 19 139 IPR001789 GO:0000160
Gma04g02141 155 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 144 IPR045279 GO:0009736
Gma04g02141 155 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR17-LIKE 6 144 - -
Gma04g02141 155 CDD REC_typeA_ARR 19 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02141 Gma-Chr4 51884871 51886211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02141 18 146 Response Regulator Gene Family AT3G56380 73.282 1.71e-60 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma04g02141 Response_reg 1.2e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02141 K14492 - gmx:100499827 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g01806 14 48475535 48476652 Gma04g02141 04 51884871 51886211 PCT
Gma02g02025 02 45828221 45829525 Gma04g02141 04 51884871 51886211 PCT