Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02138 ATGAAAATCAGCAAGAATAAGGGTCTCAAGCCTGAACAAGAAAAGGCTTCTAATTCAAACAATGGGGTGTTGATGGATTTCATGAAGCTTTCAAAGGATGACAAGGCTCAAGAACAACCATCAAGTAAGGTGGTGGTTGATTCATCTCTTTGTGACTCTAAAGGTGCAGATGATGAGAAGAATACAAAGGAAGCAAAGACTTTCTCATGCAACTATTGCAAGAGAGAGTTTTCTACCTCGCAAGCTTTGGGGGGACACCAAAACGCTCATAAACAAGAACGTGCTCTTGCAAAATGTGCCCAAGGCTTTGATGTTGGTGGCTTTGGACACTTTCCTTACTACCCTTATCCTAGTTTTTACAACTCTCATTCTCCTTATGGAGGATCTTTCAATAGGGCACTCGGGGTCCAAACTGATTCCATGATTCACAAGCATCCTTGGACCCCAAGGTATGGTCATTCTTGGTTGAAACAAGATCGTGTGACGATACCGAATTCGTCAATATTTGATGGGTTTGAAATTGTGAAAGGTTATTATCCAATTATGAAGAGTGATGGAACTCTTACTTTAAGGCAAGAGAATGGTAATGGTAATGCCAATGTTGGAACACTTTCTCTTTTTGCAAATTATGCTACCAATTCATCAAGCCAAGTCATAAACAGTGATGGCAATGCCAATGTTGGAACACTTTCTCTTTTTGCAAATGCTGCCACCACTCCATCAAGCCAACTTGGACACAGAGCAATTCTTGCAACCAAAAAAATTGATGATTATTCCATGCCAGAAGAAACCTCCAAAGGAGTATCTTCCAATCTTGATTTGTCACTTAAGCTTTAA 837 0.4014 MKISKNKGLKPEQEKASNSNNGVLMDFMKLSKDDKAQEQPSSKVVVDSSLCDSKGADDEKNTKEAKTFSCNYCKREFSTSQALGGHQNAHKQERALAKCAQGFDVGGFGHFPYYPYPSFYNSHSPYGGSFNRALGVQTDSMIHKHPWTPRYGHSWLKQDRVTIPNSSIFDGFEIVKGYYPIMKSDGTLTLRQENGNGNANVGTLSLFANYATNSSSQVINSDGNANVGTLSLFANAATTPSSQLGHRAILATKKIDDYSMPEETSKGVSSNLDLSLKL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02138 278 Gene3D Classic Zinc Finger 50 102 - -
Gma04g02138 278 PANTHER ZINC FINGER PROTEIN JAGGED 5 278 IPR045320 GO:0003700
Gma04g02138 278 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Gma04g02138 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 95 IPR013087 -
Gma04g02138 278 MobiDBLite consensus disorder prediction 1 58 - -
Gma04g02138 278 Pfam C2H2-type zinc finger 68 92 - -
Gma04g02138 278 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 5 278 - -
Gma04g02138 278 SUPERFAMILY beta-beta-alpha zinc fingers 65 95 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02138 Gma-Chr4 51847513 51848349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02138 62 144 C2H2 Transcription Factor Family AT5G10970 52.941 3.63e-18 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma04g02138 zf-C2H2_6 3.1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02138 - - gmx:102659582 539.265