Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02120 ATGGGAACCGTTAGTAACATTGGCTTCCCTTCACTATTCAGAGTTCATCTAGATTCACAAGTACTATCAAAGCATATGAAGAATAAATCATCGTGCGATTTTATGGTTCCTTCTAATCATAACTACTCTGTTAGGCTGAGTCCAATATGTTGTAAGCTATCAGAAAGTGGGATTGAGGAGAACCACACGAGCACGAGCACGGGCGAGAGGCCCTCTAAGATCAAGGACAGGATGGAGGAGTACAATATAGCTATGAAGAAAATGATGAGGAACCCTTATGAGTATCACCATGATCTGGGTATGAATTATACTCTTATAACGGACAATTTGATTGTTGGCTCCCAACCACAGAAACCTGAAGACATAGATCACCTCAAAAAGGAAGAGGGTGTGGCATACATTTTAAACTTGCAACAAGATAACGATGTTGAGTATTGGGGAGTAGACTTGCAGTCAATAATAAGAAGGTCTCGTGAACTTGAAATTAGCCACACAAGGAGACCGGCAAAAGACTTTGATCCAGATTCCTTGCGAAATGAACTACCTAAAGCAGTCTCATCCTTAGAATGGGCAATTTCTGAGGGAAAAGGAAGAGTTTATGTGCATTGTACGGCTGGACTTGGAAGAGCTCCAGCGGTGGCAATTGCTTATTTGTTCTGGTTTTGTGACATGAATCTAAATGAAGCATATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAATAAAAGAGCAATACGTGGCGCTACTTATGATTTGGCTAAGAATGATCCTTGGAAGGAGCCATTTGAGACTCTTCCAGAATATGCATTTGAGGATATAGCAGATTGGGAAAGGAACTTGATTCAAGATCGTGCCCGCTCCCTTCGTGGAATTTGA 879 0.4141 MGTVSNIGFPSLFRVHLDSQVLSKHMKNKSSCDFMVPSNHNYSVRLSPICCKLSESGIEENHTSTSTGERPSKIKDRMEEYNIAMKKMMRNPYEYHHDLGMNYTLITDNLIVGSQPQKPEDIDHLKKEEGVAYILNLQQDNDVEYWGVDLQSIIRRSRELEISHTRRPAKDFDPDSLRNELPKAVSSLEWAISEGKGRVYVHCTAGLGRAPAVAIAYLFWFCDMNLNEAYDMLTSKRPCGPNKRAIRGATYDLAKNDPWKEPFETLPEYAFEDIADWERNLIQDRARSLRGI 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02120 292 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 179 238 IPR000387 GO:0016311|GO:0016791
Gma04g02120 292 ProSiteProfiles Dual specificity protein phosphatase domain profile. 102 259 IPR020422 GO:0006470|GO:0008138
Gma04g02120 292 Pfam Dual specificity phosphatase, catalytic domain 123 242 IPR000340 GO:0008138|GO:0016311
Gma04g02120 292 SMART dsp_5 102 252 IPR020422 GO:0006470|GO:0008138
Gma04g02120 292 CDD DSP_laforin-like 101 248 IPR045204 GO:0019203|GO:0046838
Gma04g02120 292 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 3 291 - -
Gma04g02120 292 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 99 244 IPR029021 -
Gma04g02120 292 Gene3D Protein tyrosine phosphatase superfamily 85 292 IPR029021 -
Gma04g02120 292 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 3 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02120 Gma-Chr4 51702430 51705555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02120 26 291 Protein tyrosine phosphatase (PTP) family AT3G10940 71.053 4.40e-142 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02120 - - gmx:100805592 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02120 04 51702430 51705555 Gma06g01293 06 12106183 12109469 GST