LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma04g02094	ATGGGTTGCGTTTGTGGCACGTTTTCTCCCCCTCGAGAAGAGAGGCCAAGACCGCAAGTGAAGAGAGTTGCGAGCAACAAAAGTTCGAGGACTACACGTTCCTCTAAGCATGTGGGAGAGGGGGTGAATTCGAAGAAGGAGAAGACTCAGAGACAGAGAGTGAGTGTGAATGTTAATGATGGTGGTGTTGCAGAAGGAGAAAAGGCAAAACCAATTGCTAAAGAAAATAAGAGTTATAAAGATCGGGATGCTAGGGAGGAGAAGATGGCCAGATATGAATTCGTGGAAGGGTGGCCAAAGTGGTTGCTCGATAATATCCCTGCAAATGTTTTGGCTAATATTGTTCCCAAGAGTGCTGATTCCTATGAAAAACTTGCCAAGATAGGACGTGGAACATATAGCAACGTGTACAAAGCTAGAGAAAAGGGCACAAGAAAGATTGTTGCTTTGAAGAAGGTAAGGTTTGACACGTCGGATTCTGAAAGCATCAAGTTTATGGCAAGAGAGATCATGATGCTGCAGATGCTGGATCATCCCAATGTGATCAAACTTAAAGGACTAGCAACATCAAGGATGCAATACAGTCTTTATCTAGTTTTTGACTTCATGCAGTCTGATCTCACCCGCATTATCTCGCGACCCGGGGAGAAACTCACCGAAGCACAGATCAAGTGCTATATGCAGCAGCTACTTTCTGGCCTGCAGCACTGTCATGAGAAGGGAATAATGCACCGAGATATTAAGGCTTCTAACTTGTTAATAGACAGAAATGGGGTGCTGAAAATTGCAGATTTTGGGCTTGCAACTTCCATTGAAGCTGAAGGGCCTCTAACAAATAGAGTGGTGACACTTTGGTATAGGGCACCAGAACTTCTTTTGGGTTCAACCGATTATGGATATAGCATTGATCTCTGGAGTGCAGGGTGCTTGTTGGCTGAGATGTTTGTTGGAAGACCAATTATGCCTGGCAGGACAGAGGTTGAACAGATTCACATGATATTCAAACTGTGTGGTTCTCCTTCACCGGATTATTTTAAAAAACTGAAGCTAACAACAAGCTACCGGCCTACACAACATTACAAACCTAGTTTCCATGAAAACTTCCAGAAGTTTCCTTCCTCTTCCCTGGGTCTCTTGGCTACATTTCTTGATCTCAACCCTGCCCATCGTGGTAATGCTGCCTCTGCTCTCCAAAGTGATTTCTTCAAATGTAGTCCATTAGCATGTGACCCTTCAGCTTTGCCAGTAATCCCCAAAGACGAGGATGAACGCTTACAAACTAAGAGAGGCAAAAGGCAAAGGGTTTCTAAAAGAGAGCAATCATCTCAAACAAGTAGAAGTGATGCTAGTCAGTCAGAAAAGAACCAAATTGCTGAACAACCCCGTGAAGACACAGAATCGTCAAAAGAGAATAATATGGAACAACACAAGCAGGGTCAAGAAACGGGGCATAGTGCCAGCAGCACATCATCCGGTTCAAGACTCTTCATGATGACCGAAGGGAGCATGAATGCATCTATGTCCCCAGTTTTTCTCTCTAGTGGTAGTGTCAGAAAATCCCCCAAAACTGAGGGCCACCCTAATGCTCTTAAGAACATAATGAACTATAGTGCTCTCTTACAACAGGCCTCTATAATTGATATGATCAACCGCAATGAAGGCAAAGAATTCCCTCAGCTTCGTAAATCCTTCTCCGCGTTGGATTTTCGACTTGATTCTGACAAGCTATTATCAAATCTCTATGCCTTACATAATAAACATATTTAA	1767	0.4346	MGCVCGTFSPPREERPRPQVKRVASNKSSRTTRSSKHVGEGVNSKKEKTQRQRVSVNVNDGGVAEGEKAKPIAKENKSYKDRDAREEKMARYEFVEGWPKWLLDNIPANVLANIVPKSADSYEKLAKIGRGTYSNVYKAREKGTRKIVALKKVRFDTSDSESIKFMAREIMMLQMLDHPNVIKLKGLATSRMQYSLYLVFDFMQSDLTRIISRPGEKLTEAQIKCYMQQLLSGLQHCHEKGIMHRDIKASNLLIDRNGVLKIADFGLATSIEAEGPLTNRVVTLWYRAPELLLGSTDYGYSIDLWSAGCLLAEMFVGRPIMPGRTEVEQIHMIFKLCGSPSPDYFKKLKLTTSYRPTQHYKPSFHENFQKFPSSSLGLLATFLDLNPAHRGNAASALQSDFFKCSPLACDPSALPVIPKDEDERLQTKRGKRQRVSKREQSSQTSRSDASQSEKNQIAEQPREDTESSKENNMEQHKQGQETGHSASSTSSGSRLFMMTEGSMNASMSPVFLSSGSVRKSPKTEGHPNALKNIMNYSALLQQASIIDMINRNEGKEFPQLRKSFSALDFRLDSDKLLSNLYALHNKHI	588

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma04g02094	588	MobiDBLite	consensus disorder prediction	457	477	-	-
	Gma04g02094	588	Gene3D	Phosphorylase Kinase; domain 1	110	204	-	-
	Gma04g02094	588	MobiDBLite	consensus disorder prediction	442	456	-	-
	Gma04g02094	588	MobiDBLite	consensus disorder prediction	39	53	-	-
	Gma04g02094	588	CDD	STKc_CDK9_like	122	402	-	-
	Gma04g02094	588	MobiDBLite	consensus disorder prediction	413	492	-	-
	Gma04g02094	588	PANTHER	CELL DIVISION PROTEIN KINASE	72	539	-	-
	Gma04g02094	588	PANTHER	CYCLIN-DEPENDENT KINASE	72	539	-	-
	Gma04g02094	588	MobiDBLite	consensus disorder prediction	1	80	-	-
	Gma04g02094	588	SMART	serkin_6	122	402	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma04g02094	588	MobiDBLite	consensus disorder prediction	478	492	-	-
	Gma04g02094	588	Pfam	Protein kinase domain	122	402	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma04g02094	588	ProSiteProfiles	Protein kinase domain profile.	122	402	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma04g02094	588	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	242	254	IPR008271	GO:0004672\|GO:0006468
	Gma04g02094	588	MobiDBLite	consensus disorder prediction	22	38	-	-
	Gma04g02094	588	ProSitePatterns	Protein kinases ATP-binding region signature.	128	151	IPR017441	GO:0005524
	Gma04g02094	588	SUPERFAMILY	Protein kinase-like (PK-like)	115	405	IPR011009	-
	Gma04g02094	588	Gene3D	Transferase(Phosphotransferase) domain 1	205	483	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma04g02094	Gma-Chr4	51395015	51401638	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma04g02094	117	446	Core Cell Cycle Gene Families	AT5G10270	44.857	2.17e-94	296

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Gma04g02094		Pkinase	6.9e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma04g02094	K08819		-	gmx:100782603	1146.34