Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02088 ATGATGAACAACCCTGCATTATTGTCAAGGCTGTTTCCGGGTATCAATAGGGAGAGGGAGATGTCTGCCATGGTCTCAGCTTTGACCCACGTTGTCTCCGGAGAGGTTCCAACCGGTGATTCTTCTTCAGTTCTTCATCATCAACCTCATGATGATGATGCTGTTACTGTTAAACCAAACATGCCTTCTACAACACCCTTTTCATCTACTTATGTTGTTGCCACCTCTTCTCTCAAGAGAAGTAGACAACATGATACATATACACCATCCTTCTCACATCCACCTTCATCATTCCCTGCTATGCCAACAAGTGCAGAATGTTCAAAGAGTGGAATGGGAAATGCTGTGTACGAATACAGAACAAGAGGAACAGAGAATGTAAAGAAGGAGGAGGGAAGGAGAAAATATAGAGGGGTGAGGCAGAGGCCGTGGGGAAAATGGGCAGCGGAGATAAGAGACCCATTCAAAGCAGCAAGAGTATGGTTAGGAACATTTGAGACGGCAGAGGCAGCAGCTAGAGCCTACGATGAAGCTGCCCTTCGTTTTAGGGGCAGCAAGGCCAAACTCAACTTCCCCGAGAATGTCACTCTCCGACAACCTCAATTCACTGTTTCCACATCAACAGACCCATTTCAACTCTCGGGTACCAACCTTTATGATCATAGGATGTTTCTGACTTCTAATACCATGGCTTCTCATCATCTTCAATCTTCTTTGCCGCTGCCACCAGCAACCTCCTCTTCTCTAACTTCTCCTCCTCAGAACATCACTTCACTTTCTTCCTTGTATTCTGCCCAGTTGCCCCCATGGTCGGCCTCTGGTCATAGCTCTTCTTCCTCCCCATGA 846 0.4681 MMNNPALLSRLFPGINREREMSAMVSALTHVVSGEVPTGDSSSVLHHQPHDDDAVTVKPNMPSTTPFSSTYVVATSSLKRSRQHDTYTPSFSHPPSSFPAMPTSAECSKSGMGNAVYEYRTRGTENVKKEEGRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGSKAKLNFPENVTLRQPQFTVSTSTDPFQLSGTNLYDHRMFLTSNTMASHHLQSSLPLPPATSSSLTSPPQNITSLSSLYSAQLPPWSASGHSSSSSP 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02088 281 MobiDBLite consensus disorder prediction 84 105 - -
Gma04g02088 281 Gene3D AP2/ERF domain 134 194 IPR036955 GO:0003700|GO:0006355
Gma04g02088 281 ProSiteProfiles AP2/ERF domain profile. 135 192 IPR001471 GO:0003700|GO:0006355
Gma04g02088 281 PRINTS Ethylene responsive element binding protein signature 136 147 IPR001471 GO:0003700|GO:0006355
Gma04g02088 281 PRINTS Ethylene responsive element binding protein signature 158 174 IPR001471 GO:0003700|GO:0006355
Gma04g02088 281 SMART rav1_2 135 198 IPR001471 GO:0003700|GO:0006355
Gma04g02088 281 Pfam AP2 domain 135 184 IPR001471 GO:0003700|GO:0006355
Gma04g02088 281 CDD AP2 135 194 IPR001471 GO:0003700|GO:0006355
Gma04g02088 281 PANTHER DNA-BINDING DOMAIN 16 266 IPR044808 GO:0003700|GO:0009873
Gma04g02088 281 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 16 266 - -
Gma04g02088 281 SUPERFAMILY DNA-binding domain 135 193 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02088 Gma-Chr4 51361762 51363319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02088 133 197 AP2-EREBP Transcription Factor Family AT5G61890 87.692 2.35e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma04g02088 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02088 - - gmx:100793215 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02088 04 51361762 51363319 Gma06g01323 06 12442874 12444733 GST