Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02082 ATGGATTTGGACGATTTCCGATCCATATTGGACACAGCGGGCGTCGACGTGTGGATGTTCATCGACGCCGCAATCGCCGTTGCCTCCTCGGATTCCGCCGGAGATCTGAAGCGCCGCCGCGATGGCATCGTCGAGCGCCTCTACGCCGCCACGGCGGCTCCTCCGTGGTGCCGGAATTGCGACGAGGGCGGCCACCGCCTCAACGGCCACAGAATCAAGAAACAGAGTCGCCATAGTCCCAGCCCCGAACGGCAACCGCACCGCTCCACCGCCACAGCTTCCCCGGCAACGCCGCAGTCTCTCGACAACGGCGAAGACGAAGACAACGACGAGGATTTAGATCCTTATGGTGGCTTGTTGGACGACGAACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAGTCTGAAGATTCTTTGGTGGAGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAGGAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAACGACCTTCGGCGATTGGTGAAGTTGCTTGTCAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAACACTCTGATGGCTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATCAGCAGATTCCTGATTTTGCATACTCGCCCAATCCACACAATGGGAGCTCAGGGTCTGACCGTAACAACTCAGAAGCAGAACGCAAACCCAAAGTAGTTCCCCGCAGTGAACCTAGGCCAAAACACGCGCCATCACCGTCAGTTTCAACCCCTGCTTCCGCTACTCAAAACAGACAGAGGGAGAGCAGTTTTGACGCGGAGAGGCTTGCTTCGGCGAGAAGGAGGCTTCAAGAGAACTACAAAGAGGCTGAAATTGCCAAAAGGCAAAGAACGATTCAGGTGATGGACATCCATGACTTACCAAAGGCAAAACCCAAGAATAATGCCTTCTTTGGGAAGAACAAAGGTGGTGGTGGTGGTGGTTCTCAGGGAAGGCACTGGTGA 1071 0.5406 MDLDDFRSILDTAGVDVWMFIDAAIAVASSDSAGDLKRRRDGIVERLYAATAAPPWCRNCDEGGHRLNGHRIKKQSRHSPSPERQPHRSTATASPATPQSLDNGEDEDNDEDLDPYGGLLDDEQKKILEIKEQLEEPDQSEDSLVELLQSLADMDITFQGLKETDIGRHVNRLRKHPSNDLRRLVKLLVRKWKEIVDEWVKLNPRGGSNTLMADGDSSPVQKTTQNGHHQQIPDFAYSPNPHNGSSGSDRNNSEAERKPKVVPRSEPRPKHAPSPSVSTPASATQNRQRESSFDAERLASARRRLQENYKEAEIAKRQRTIQVMDIHDLPKAKPKNNAFFGKNKGGGGGGSQGRHW 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02082 356 Pfam TFIIS helical bundle-like domain 147 196 IPR017923 -
Gma04g02082 356 MobiDBLite consensus disorder prediction 67 119 - -
Gma04g02082 356 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 125 209 IPR035441 -
Gma04g02082 356 CDD TFIIS_I 124 197 - -
Gma04g02082 356 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 120 207 IPR035441 -
Gma04g02082 356 MobiDBLite consensus disorder prediction 275 289 - -
Gma04g02082 356 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 356 - -
Gma04g02082 356 MobiDBLite consensus disorder prediction 85 102 - -
Gma04g02082 356 MobiDBLite consensus disorder prediction 251 267 - -
Gma04g02082 356 MobiDBLite consensus disorder prediction 103 117 - -
Gma04g02082 356 MobiDBLite consensus disorder prediction 210 250 - -
Gma04g02082 356 MobiDBLite consensus disorder prediction 332 356 - -
Gma04g02082 356 MobiDBLite consensus disorder prediction 203 295 - -
Gma04g02082 356 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 356 IPR044790 -
Gma04g02082 356 SMART TFS2_5 127 198 IPR003617 GO:0005634
Gma04g02082 356 Coils Coil 295 322 - -
Gma04g02082 356 ProSiteProfiles TFIIS N-terminal domain profile. 122 199 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02082 Gma-Chr4 51310363 51312292 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gma04g02082 Med26 4.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02082 - - gmx:100790582 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02082 04 51310363 51312292 Gma06g01332 06 12521619 12523614 GST
Gma05g01850 05 39994549 39999040 Gma04g02082 04 51310363 51312292 PCT
Gma08g01342 08 11356006 11357893 Gma04g02082 04 51310363 51312292 PCT
Gma04g02082 04 51310363 51312292 Gma05g01850 05 39994549 39999040 PCT
Gma04g02082 04 51310363 51312292 Gma08g01342 08 11356006 11357893 PCT