Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02079 ATGCTGGAAATCTCAACTTCACAGGAAACCCCGCTAGAGAACGCGGACGGCGGCTCCGCGGCGGTCTCGGACGGGTCGAAAGCCGAGCACGGCGAGGACGATGACCGGAATCCCGCCGCGAACCGGTGGCCGAGAGAGGAGACAATGGCTTTGCTCAATATAAGGTCCGAAATGGACGTTGCTTTCAAAGACGCAAACCTCAAAGCCCCTCTCTGGGAACAAGTCTCAAGGAAATTATCGGAGCTAGGTTATAATAGGAGTGCGAAGAAGTGCAAGGAGAAATTCGAGAACATTTACAAGTACCATAGGAGAACTAAAGAAGGTCGTTTTGGAAAATCAAACGGTGCAAAAACTTACCGATTTTTCGAGCAATTGGAAGCTTTAGACGGAAACCACTCACTTCttcctccgacaacaaccgacaacaacaacaacaacaacaacgttggtgatgatgtTGTCCTGAACGCGGTTCCGTGTTCGGTTAGTGCGGCGGCGCACGAGCACTCGAGTTCGACGACGTCGTGTTCGGGGAAGAAGAAGAGGAAGCTGACGCAGTTTCTGGAGGGGTTGATGAGGGAAGTGATAGAGAAGCAAGAGACGCTGCAGAGGAAGTTCGTGGAAGTGTTGGACAAGTGTGAAAAAGATCGAATGGCGAGGGAGGAAGCGTGGAAGAAGGAGGAACTCGAAAGGATCAAGAAAGAACGCGAGCTTCTGGCTCAGGAAAGATCAATTGCTGCTGCCAAAGACGAAGCTGTTCTTGCTTTTCTTAGAAAGTTTGCAGAAGCAGAAGACACGGTGCAGTTACTCGAGAAAATTCAGGTTCAAAACGACAAACAGAAAAACATGAAACAAAATGGCGGTAATGATAATGCTAATGGAGGTGGTGGTGTCGCAGTTGTCACTGATATGGATAAACAAGAATGTGGAAATACTAATGTTCGTGTTAGTGTTGGGAATTTTGTGCACATGAGTAGTTCTCGTTGGCCGAAGGATGAAGTGGAGGCATTGATAAGGTTAAGGACTCAAATTGATGTGCAGGCACAATGGAATAGTAATAACAATAACAATAATGGGTCTAAAGGGCCTCTTTGGGAGGAGATATCTTCAGCTATGAAGAGCCTTGGTTATGATCGAAGTGCAAAGAGGTGTAAAGAGAAATGGGAGAACATAAACAAGTACTTCAAGAGGATAAAGGAGAAGAGCAAGAGGAAGCCTCAGGATTCCAAGACGTGTCCTTATTATCATCACCTTGAGGCTTTGTACAGTAAGAAGCCTAAGAAGGTGGATCTTGGGAACGAGTTGAAGCCTGAGGAGCTGTTGATGCATATCATGGTGAGTCAAAGTCAAGAACAGCAACAGCAACAAGAGATGCAGACTCAGACTCAGTCACCATCTGAAGATGCTGAGAGAGATCAGAATCAGGGAGATAATGAAGATCAAAGTGAGTATCAGAATCAGATGGTTGATAATAATAGTCCTTCCATTGCAATTATGAGTTAA 1503 0.4431 MLEISTSQETPLENADGGSAAVSDGSKAEHGEDDDRNPAANRWPREETMALLNIRSEMDVAFKDANLKAPLWEQVSRKLSELGYNRSAKKCKEKFENIYKYHRRTKEGRFGKSNGAKTYRFFEQLEALDGNHSLLPPTTTDNNNNNNNVGDDVVLNAVPCSVSAAAHEHSSSTTSCSGKKKRKLTQFLEGLMREVIEKQETLQRKFVEVLDKCEKDRMAREEAWKKEELERIKKERELLAQERSIAAAKDEAVLAFLRKFAEAEDTVQLLEKIQVQNDKQKNMKQNGGNDNANGGGGVAVVTDMDKQECGNTNVRVSVGNFVHMSSSRWPKDEVEALIRLRTQIDVQAQWNSNNNNNNGSKGPLWEEISSAMKSLGYDRSAKRCKEKWENINKYFKRIKEKSKRKPQDSKTCPYYHHLEALYSKKPKKVDLGNELKPEELLMHIMVSQSQEQQQQQEMQTQTQSPSEDAERDQNQGDNEDQSEYQNQMVDNNSPSIAIMS 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02079 500 PANTHER - 1 498 - -
Gma04g02079 500 Coils Coil 229 251 - -
Gma04g02079 500 ProSiteProfiles Myb-like domain profile. 35 99 IPR001005 -
Gma04g02079 500 ProSiteProfiles Myb-like domain profile. 327 392 IPR001005 -
Gma04g02079 500 CDD GT1 41 106 - -
Gma04g02079 500 MobiDBLite consensus disorder prediction 448 500 - -
Gma04g02079 500 CDD GT1 327 399 - -
Gma04g02079 500 SMART sant 325 394 IPR001005 -
Gma04g02079 500 SMART sant 39 101 IPR001005 -
Gma04g02079 500 MobiDBLite consensus disorder prediction 448 469 - -
Gma04g02079 500 MobiDBLite consensus disorder prediction 26 42 - -
Gma04g02079 500 Gene3D - 329 397 - -
Gma04g02079 500 Gene3D - 43 104 - -
Gma04g02079 500 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 1 498 - -
Gma04g02079 500 Pfam Myb/SANT-like DNA-binding domain 41 128 IPR044822 -
Gma04g02079 500 Pfam Myb/SANT-like DNA-binding domain 327 421 IPR044822 -
Gma04g02079 500 MobiDBLite consensus disorder prediction 1 44 - -
Gma04g02079 500 MobiDBLite consensus disorder prediction 479 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02079 Gma-Chr4 51267807 51270218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02079 32 425 Trihelix Transcription Factor Family AT1G76880 43.261 3.88e-112 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gma04g02079 Myb_DNA-bind_4 2.4e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02079 - - gmx:100137080 901.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02079 04 51267807 51270218 Gma06g01335 06 12563364 12565860 GST