Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02075 ATGTATTCTGCTGCTTCCACTTCCTTTACTTCACCACTTCTCCATGACCTTGAGAACTTCCACTACTCAAGAAGGTTACTCCTTCACTCCCCATATCTTAACCAATCAGAAAAGCCCCCAACAAGCAGCCATGATTCAACAGAAACATACCTTGGAGATGGCAATTTCGATGCAAATGTTGTCATGGTACTCTCAGTCCTACTATGTGCTCTCATATGCTCACTGGGGCTAAACTCCATCATAAGGTGTGCACTAAGGTGTTCAAATTTTGTTGTGAGTGACTCAGTGGCAACCAACAACAATAACCCTCCAGCAGCAGCAAGAGTGGCCAACACAGGAGTGAAGAAGAAAGCTCTCAAGACTTTCCCCACGGTGAGTTACTCAGCTGAGCTAAACTTGCCAAGTTTGGACTCAGAGTGTGTGATATGCTTATCAGAGTTCACAAGTGGTGACAAAGTGCGCATTTTGCCAAAGTGCAACCACCGGTTCCATGTACGCTGCATTGACAAATGGCTAAGTTCACACTCGTCATGCCCCAAATGCAGACAGTGCCTAATTGAGACTTGCCAGAAGATTGTTGGGTGCAGTACTCAACAAGCTAGCTCATCACAACAACAACAACAACAACAACATGTGTTAGCAGTGCCAGAAACCATTGTGACCATAGTAGCCCCACTTGAGCCAGAAGGTTTGGTGCGTAACTATAGGGAACTTAGCTAA 720 0.4542 MYSAASTSFTSPLLHDLENFHYSRRLLLHSPYLNQSEKPPTSSHDSTETYLGDGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNFVVSDSVATNNNNPPAAARVANTGVKKKALKTFPTVSYSAELNLPSLDSECVICLSEFTSGDKVRILPKCNHRFHVRCIDKWLSSHSSCPKCRQCLIETCQKIVGCSTQQASSSQQQQQQQHVLAVPETIVTIVAPLEPEGLVRNYRELS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02075 239 Pfam Ring finger domain 139 182 IPR001841 -
Gma04g02075 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 186 IPR013083 -
Gma04g02075 239 PANTHER RING-H2 FINGER PROTEIN ATL78 4 238 IPR044602 GO:0016567|GO:0016740
Gma04g02075 239 SUPERFAMILY RING/U-box 118 187 - -
Gma04g02075 239 SMART ring_2 140 181 IPR001841 -
Gma04g02075 239 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 238 - -
Gma04g02075 239 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Gma04g02075 239 CDD RING-H2_PA-TM-RING 139 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02075 Gma-Chr4 51226198 51227269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02075 25 186 C3H Transcription Factor Family AT3G10910 46.951 2.38e-43 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02075 K19040 - gmx:100787934 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02075 04 51226198 51227269 Gma06g01339 06 12607391 12608662 GST
Gma05g01861 05 40064259 40065155 Gma04g02075 04 51226198 51227269 PCT
Gma04g02075 04 51226198 51227269 Gma05g01861 05 40064259 40065155 PCT