Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02067 ATGGCTACTGCCACCACCAATTCTTCGCCCTCGGCTCAGCGCCACGTCGGCTTCAGCCGCCGCACGCAGGCGCCGCGCCAGCTGGACGACgactcgccgccggtgaacaagtaccggctgctgtcggagataatggcgcgcgcgccgtacgcggtgctggagagagaaacatacagcgacctcttgtgcgaccaatgcggctccggcgagctgccggaggagctgcttctctgcgacaaaTGCGATAAAGGCTTCCACATGAAATGCGTCAGGCCTATCGTCGTGAGGGTTCCGATTGGGTCGTGGCTTTGCCCTAACTGTCAGGGAGGGAAGAGAGTGCGGACTTTCTCTCAGAAGAAGATAATTGATTTCTTCGGGATTCGGAGGAGTTCTGATGATGCTAATGACAAGCGTTCTTCTCAGGATGCTAAGAAGCGTCGGAAACGTTCACGGCCTCTGGTATTACATAAGAAAAAGAGGAGATTGTTACCATTTGTTCCTACAAAAGATCCTGCCCAGAGATTGAAACAGATGGGTTCTCTTGCTTCTGCTTTAACAGCCTTAAATTTGGAATTCAGTGATCACCTCACATACTTGCCTGGAATGGCTCCTAGATCTGCAAATCAAGCCTCACTTGAAAATGGCGGCATGCAGACTCTTTCCAAGGAAGACATGGAGACCTTAGAAAAATGCATTGCTATGTCTAAAAGAGGCGAATTCCCTCCCTTTATGGTTGTTTATGATTCACGTGAAGGCTATACTGTTGAGGCTGATGACCTAATCAAGGACATGACAATTATTGCTGAATACACTGGCGATGTGGATTACCTTGACAAACGGGAACAGGATGACTGTGACAGTATCATGACCCTTCTTCTTGGAGCAGAAAGTTCTCAAAGTCTTGTTATTTGTGCTGATAAACGAGGAAACATTGCTCGCTTTATCAGTGGCATAAATAATCACACACAGGAAGGTAGGAAGAAGCAGAATTGTAAGTGTGTGAGATACAATGTTAATGGTGAATGCAGGGTCTTTTTGGTTGCTACTCGTGATATTTCTAAGGGAGAGAGGCTATACTATGATTATAATGGTCATGAGTATGAATACCCGACTCATCATTTTGTCTAA 1128 0.3927 MATATTNSSPSAQRHVGFSRRTQAPRQLDDDSPPVNKYRLLSEIMARAPYAVLERETYSDLLCDQCGSGELPEELLLCDKCDKGFHMKCVRPIVVRVPIGSWLCPNCQGGKRVRTFSQKKIIDFFGIRRSSDDANDKRSSQDAKKRRKRSRPLVLHKKKRRLLPFVPTKDPAQRLKQMGSLASALTALNLEFSDHLTYLPGMAPRSANQASLENGGMQTLSKEDMETLEKCIAMSKRGEFPPFMVVYDSREGYTVEADDLIKDMTIIAEYTGDVDYLDKREQDDCDSIMTLLLGAESSQSLVICADKRGNIARFISGINNHTQEGRKKQNCKCVRYNVNGECRVFLVATRDISKGERLYYDYNGHEYEYPTHHFV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02067 375 MobiDBLite consensus disorder prediction 1 20 - -
Gma04g02067 375 ProSitePatterns Zinc finger PHD-type signature. 63 107 IPR019786 -
Gma04g02067 375 PANTHER HISTONE ACETYLTRANSFERASE 18 373 - -
Gma04g02067 375 SMART set_7 242 369 IPR001214 GO:0005515
Gma04g02067 375 MobiDBLite consensus disorder prediction 1 33 - -
Gma04g02067 375 ProSiteProfiles SET domain profile. 241 363 IPR001214 GO:0005515
Gma04g02067 375 SUPERFAMILY FYVE/PHD zinc finger 50 113 IPR011011 -
Gma04g02067 375 SUPERFAMILY SET domain 235 367 IPR046341 -
Gma04g02067 375 CDD PHD_RSF1 62 107 - -
Gma04g02067 375 Pfam PHD-finger 63 108 IPR019787 -
Gma04g02067 375 Pfam SET domain 239 363 IPR001214 GO:0005515
Gma04g02067 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 121 IPR013083 -
Gma04g02067 375 Gene3D SET domain 146 375 IPR046341 -
Gma04g02067 375 MobiDBLite consensus disorder prediction 131 153 - -
Gma04g02067 375 SMART PHD_3 62 108 IPR001965 -
Gma04g02067 375 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 18 373 - -
Gma04g02067 375 CDD SET_ATXR5_6-like 238 375 - -
Gma04g02067 375 ProSiteProfiles Zinc finger PHD-type profile. 60 110 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02067 Gma-Chr4 51142796 51146374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02067 29 145 C2H2 Transcription Factor Family AT3G01460 32.000 3.47e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma04g02067 SET 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02067 K24406 - gmx:100785817 765.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02067 04 51142796 51146374 Gma06g01347 06 12686480 12690497 GST