Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02065 ATGAGTGGAAGTGGCAAAAAGCGCTCTTCAAAGTGGGATTTGAGAGACGATCCTGATTTTTCACCTGATGATAGTCAGCAATTGCGGTCTGGGTGGTCCTCTGCAGGTGATAAATTAAAGCCTGGTATGGGATTTTCATCCAAGGAACCTTTTTCTGGAGGCAGAGGTTCAAATAAGGACGATATTATGAATAAAGACTATAGAGTTTTGGATGCAACAATGGAATGGGATGAGGATGGAAGTTACAACAATGAAATGTCTCCTGGGTTGGAGGGATGGAAACATAATAAGAGACATAGTCAATCCCCCAAAAATGGTTGGAGCAGGTCAGTCAGTAGTCGAAGCAGGAGCCCTCCTCATGGTTTTAGGTGGGATTCAGGAGTCAATGACAGAAATAGAATGCGGGCTGGAGGATCGACACAACCATGTAGAGATTTTGCTGCTGGTAAATGCAGAAGAGGCAGCCACTGCCATTTTCTTCATGATAATCAAAATCATGAGGATAGTTGGGAAGATAAGTACAGGGAAGATGGAGCTCCCAGATATTCTGCTCCCCACGAGGGTAGAGACTATTCTCTTAAGAGTGGTAGATCTAATGAAGCCTGTATTAATTTTCCAAAAGGAAGGTGTAGAATGGGAGCATCATGCAAGTTTGTGCATCATAACAATTCTGATGGACACAGTAAAGTTTCTGTGGATGAATTAGCTAGAGAGAGGGAAATTGATAGAAGGCACAGAGACAGTTCTTTTGAGCAGGGTGGAGGGCATGGGCCAAACCGTAGTGGTGATACTCTTTGCAAATTTTTTGCTAATGGACATTGTCGTAATGGTAAATATTGTAGGTTTTCTCATGATAGGCAAGCATGTAGAAGCCCTAATAGAAGATCAAGAGATGATAGGTGGGCAAGCAATCCTGGAGGAGATTATCATATGCTGGATAGACCGAAATTGAGTGATTCAGTTAGTCCTAATAGAAGGCCAAGGGATGATAGGTGGGGTTCAGATGGTAACAGGGCTGATGCAGATAAAGTTTGGGACAGTCCAAAGCGGAATGATACAGTTGCTGTCTCTGATACAGCAAAGCTGGTTGAGGACAAAAGTGAAAATGTGGTTGCCGCAGAGCAAGGATTCACCCCTTTGGCTACGAGGGATGGATGGGGTCATAGTTTGGATAAGAGCAGAGTGCATGGTGAACAACCATTTTCTAGTGATAAGAAGGAAGCTGACAGTTGGATAACAGGAAATAATGCTGCCAACATGCATGGTTCCCAGTCAATAGGTACAGACATTTGGTTGGGTGATGATGCAAAAATGTCTCCAGATTGGGATTACAGGGTGAGATCTTCCAGCTGTATTGAAGAAAAGCATGAACAGAATAAGCATGGGATAACGCAGGGTTTTATGTATTTAGACACCTCTGAACATGACAGAATACAAATTGCTCCAGGACAAGGTTTTAATCAGAATGCAGTGAGTTTTAATTCTTTGCATTCTTCAAGCTGCCAAGCAGTTGGACAAAGTCAAGTAGCAGTTCCCATTCTACCTTCAAAGGGTGGAATTGTTGATGGTATGCTGAAACAGGAAGTCTCCACTGAGAAAAAGTACACTGCTGAACCAAATATCATGGATGCTGGCTTATCACAAGTTAGTTCAAGAAATCCTCCTCCAACCGCGAACGTGGTAGGCAAAGAACAGCTTGCTCAGCTTACCAATCTCTCAGCCTCGCTGGCTCATATCCTCGGGACAGGGCAACAGCTGCCACAACTTTATGCTGCTTTAAATTCTCATGATGCAAAGGACATATCCTCCCTAGCAAAAACTGAGGTGCCTGCTATGCCTGTTTCCAACACATTCATCAGGCCAGATCCTACTGTTGGACTCCTGAAGCAATATGATCCAATGTGTGACAGTGTTGAGCCAAAGGGTGCTGTTGCAAGTGGGGTACCCCCAGCCATTCCTCCAAGTCAAAAAGTTGCAGATGTAGTGGAAATTCCGTCACAGTCCAACACAGGAAGACAAAATTGTGGTGATTCTTCCAAGGCTGCTGGCTCAGAAGAACTTGTCAAGAGTGATCCTCTAATCCAGTTGCAGCCAGGTCAAAACACTGGGGTTAATAAGGATAATAACAAGGAAATGTTACCTGAGGAAACTCTAAAATCTAAAGATGATCCTAAAAGTACCAAAGAGAGTGGTCCTTTTGAAAACATGGAGCAAACTGATGGTCCTGATGAGGCAAAGAAAATAAAGGGTATGAAGGGGAATCGTGCATTTAAATTTGCATTGGTTGAGTTTGTTAAGGAGCTTCTAAAACCAACATGGAAAGATGGTCAAATCACCAAAGAAGATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACTGGTTCCATGCAGGGGGTCAATATTCCTCAGACACAGGAGAAAATTGATCACTATTTGTCATTTTCAAAACCAAAGCTTAACAAACTTGTACAGgcgtatgtggaaaaggttcagaagGCTTAG 2508 0.4238 MSGSGKKRSSKWDLRDDPDFSPDDSQQLRSGWSSAGDKLKPGMGFSSKEPFSGGRGSNKDDIMNKDYRVLDATMEWDEDGSYNNEMSPGLEGWKHNKRHSQSPKNGWSRSVSSRSRSPPHGFRWDSGVNDRNRMRAGGSTQPCRDFAAGKCRRGSHCHFLHDNQNHEDSWEDKYREDGAPRYSAPHEGRDYSLKSGRSNEACINFPKGRCRMGASCKFVHHNNSDGHSKVSVDELAREREIDRRHRDSSFEQGGGHGPNRSGDTLCKFFANGHCRNGKYCRFSHDRQACRSPNRRSRDDRWASNPGGDYHMLDRPKLSDSVSPNRRPRDDRWGSDGNRADADKVWDSPKRNDTVAVSDTAKLVEDKSENVVAAEQGFTPLATRDGWGHSLDKSRVHGEQPFSSDKKEADSWITGNNAANMHGSQSIGTDIWLGDDAKMSPDWDYRVRSSSCIEEKHEQNKHGITQGFMYLDTSEHDRIQIAPGQGFNQNAVSFNSLHSSSCQAVGQSQVAVPILPSKGGIVDGMLKQEVSTEKKYTAEPNIMDAGLSQVSSRNPPPTANVVGKEQLAQLTNLSASLAHILGTGQQLPQLYAALNSHDAKDISSLAKTEVPAMPVSNTFIRPDPTVGLLKQYDPMCDSVEPKGAVASGVPPAIPPSQKVADVVEIPSQSNTGRQNCGDSSKAAGSEELVKSDPLIQLQPGQNTGVNKDNNKEMLPEETLKSKDDPKSTKESGPFENMEQTDGPDEAKKIKGMKGNRAFKFALVEFVKELLKPTWKDGQITKEDYKTIVKKVVDKVTGSMQGVNIPQTQEKIDHYLSFSKPKLNKLVQAYVEKVQKA 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02065 835 ProSiteProfiles Zinc finger C3H1-type profile. 260 287 IPR000571 GO:0046872
Gma04g02065 835 SUPERFAMILY CCCH zinc finger 262 285 IPR036855 GO:0046872
Gma04g02065 835 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 833 - -
Gma04g02065 835 MobiDBLite consensus disorder prediction 77 141 - -
Gma04g02065 835 MobiDBLite consensus disorder prediction 289 351 - -
Gma04g02065 835 ProSiteProfiles Zinc finger C3H1-type profile. 137 164 IPR000571 GO:0046872
Gma04g02065 835 SMART c3hfinal6 197 222 IPR000571 GO:0046872
Gma04g02065 835 SMART c3hfinal6 260 286 IPR000571 GO:0046872
Gma04g02065 835 SMART c3hfinal6 137 163 IPR000571 GO:0046872
Gma04g02065 835 MobiDBLite consensus disorder prediction 241 261 - -
Gma04g02065 835 Gene3D - 255 311 - -
Gma04g02065 835 MobiDBLite consensus disorder prediction 103 119 - -
Gma04g02065 835 MobiDBLite consensus disorder prediction 312 349 - -
Gma04g02065 835 MobiDBLite consensus disorder prediction 8 23 - -
Gma04g02065 835 MobiDBLite consensus disorder prediction 694 708 - -
Gma04g02065 835 MobiDBLite consensus disorder prediction 289 304 - -
Gma04g02065 835 Pfam RNA-binding, Nab2-type zinc finger 201 220 - -
Gma04g02065 835 MobiDBLite consensus disorder prediction 1 63 - -
Gma04g02065 835 MobiDBLite consensus disorder prediction 709 730 - -
Gma04g02065 835 MobiDBLite consensus disorder prediction 667 745 - -
Gma04g02065 835 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 162 IPR000571 GO:0046872
Gma04g02065 835 ProSiteProfiles Zinc finger C3H1-type profile. 196 223 IPR000571 GO:0046872
Gma04g02065 835 Gene3D - 133 236 - -
Gma04g02065 835 Pfam CCCH-type zinc finger 265 285 IPR041367 -
Gma04g02065 835 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 833 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02065 Gma-Chr4 51111564 51120803 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma04g02065 zf-CCCH 4e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02065 - K22909 gmx:100783856 1700.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02065 04 51111564 51120803 Gma06g01353 06 12720703 12724889 GST