Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02057 ATGGCCAAACCAAAAATGCCAGGGTTTCGGTTTCAACCCACTGACGTTGAGCTGATTGAGTATTTTCTGAAGAGGAAGGTTCGGGGTAAGAAATTCCCTTCCGAAATAATTGCTGAACTTGACTTGTACAAGTTTGCTCCGTGGGACCTCCCAGATATGTCTTTGCTCAAGAATGGGGATTTGAATTGGTACTTCTTTTGCCCTCGGGGAAAGAAGTATTCGACTGGTGGGAGGTTGAATCGGGCCACGGAGGCTGGGTATTGGAAGACTACTGGGAAGGATAGAGCAATTGAACACAATAATAGAGTTGTGGGGATGATAAAAACACTGGTTTTTCACACTGGTAGAGCCCCTAAGGGAGATCGAACTGATTGGGTTATGCATGAATTTAGACTTGATGACAAGGTGCTGGCTGATGAAGGCGTATTGCAGGACTCCTATGTGATTTGTAGGGTGTACCAAAAGGAGGGTCCTGGTCCTAGGAATGGTGCACAATATGGTAAACCATATGAGGAGAAAGAGTGGGAAACAGATGAGGAAATTGATTCTGTACAATCTGCCCCTGTTGCTGCTGTTTGTGCACCTGTTCCTATACAACCTAGTGAAAGCCATATTTCCGTTGCTAATTACATCCATCCCTCTACAAGTGGATGTGCTGGATTGACctctgtatcatgtgtatcagaattgatgccatcttgctcgacacatccttcagcacctagcaatccagttggcactgtatcatgtgtatcagaattgattccctcttgctcggaaccacatcatttgccatcaaacaatcaagttggctctgtttcatgtgtttcagaattcatgccctcttgctcggcacatccttcagctccaaataatcaagttgACAATGACATTCTATCTTTGCTTGATTGTTTCTTTGAAGATGATGACACATTGGCTGTGAAAGAAAACAACAGAATTGAGAACATTGATGATCCTGATCAGGCAAACAATGCCGATGGTGCACTGTGTTCAGATCCAAATGCTATTTTTGAGGAGTTAGGAGACCTTAACAGCTTGGTTGGATTGGGTGAAGGCAGTTTTTCCTGTGGCCAGAAAAATGAATATACTACAAGCGAAATGCTTTATACTGTTGATATATTCGGGTCTTGTGACCATGACTTCTTGGAGTTGCTTGACCTAGAGACACCGCAGCTCTGGCTGAATAAACATGGAAGTGGTAGCCAAGATAAGTAA 1236 0.3592 MAKPKMPGFRFQPTDVELIEYFLKRKVRGKKFPSEIIAELDLYKFAPWDLPDMSLLKNGDLNWYFFCPRGKKYSTGGRLNRATEAGYWKTTGKDRAIEHNNRVVGMIKTLVFHTGRAPKGDRTDWVMHEFRLDDKVLADEGVLQDSYVICRVYQKEGPGPRNGAQYGKPYEEKEWETDEEIDSVQSAPVAAVCAPVPIQPSESHISVANYIHPSTSGCAGLTSVSCVSELMPSCSTHPSAPSNPVGTVSCVSELIPSCSEPHHLPSNNQVGSVSCVSEFMPSCSAHPSAPNNQVDNDILSLLDCFFEDDDTLAVKENNRIENIDDPDQANNADGALCSDPNAIFEELGDLNSLVGLGEGSFSCGQKNEYTTSEMLYTVDIFGSCDHDFLELLDLETPQLWLNKHGSGSQDK 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02057 411 ProSiteProfiles NAC domain profile. 5 155 IPR003441 GO:0003677|GO:0006355
Gma04g02057 411 PANTHER PLANT NAC DOMAIN PROTEIN 4 239 - -
Gma04g02057 411 Pfam No apical meristem (NAM) protein 7 132 IPR003441 GO:0003677|GO:0006355
Gma04g02057 411 SUPERFAMILY NAC domain 6 155 IPR036093 GO:0003677|GO:0006355
Gma04g02057 411 Gene3D NAC domain 14 157 IPR036093 GO:0003677|GO:0006355
Gma04g02057 411 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02057 Gma-Chr4 51029327 51033656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02057 1 353 NAC Transcription Factor Family AT5G09330 43.820 2.70e-89 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma04g02057 NAM 6.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02057 - - gmx:100781170 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02057 04 51029327 51033656 Gma06g01360 06 12806515 12809317 GST
Gma05g01883 05 40304761 40306901 Gma04g02057 04 51029327 51033656 PCT
Gma04g02057 04 51029327 51033656 Gma05g01883 05 40304761 40306901 PCT