Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02054 ATGCCCACTTGGTGGGGTAAAAAGTCCAGCAAGACCAAGGACCAACAGCACCAACAACAACAAGACCACCCTCATGGCGCCGCCGCCACCACCACCCTCCTTCACTTCAATTTTATCAAGCCCAAGCCCAACCCCAAGCCCAGTAAGAGCTTCGACGACGTCGTGAGAAACTCCCCTCGTGCCAGCCGCGATTTCGGTTCCTCCGCCGCCGTCGACCAAGGTCTTCCCTTGCCTCGCCCCTCCGTCTTCTCCACCCAAAGCTTCGCCATCGACCAAGGCCTTGTTTTTGGATCTGCCTCTGTTTCCGGCTCCAGCGTCAGCTCCAGTGGCTCCTACGATGATCACCCTCAGATTAATGCCTCCAGAGGGCAAGGTGACATGAAGTTCCTTGTGAGGTCTAAAAGCCCGGGTCCTGGGTCAAGAGGGCCCACCAGCCCAACATCACCTCTGCATCCAAAGTTGCTTGGTTTGAGTCTTGACTCCCCTACAGGCAGGCAAGAAGGTGAATGTCATCCATTGCCTCTTCCGCCAGGTTCTCCTACCAGTCCTTCTTCTTCTCTTCCCAGCATGAGAGCAAATGGAATGACGGAACACACTACCAGTAACCTTTCCAAGTGGAAGAAAGGAAAGCTTCTTGGTCGGGGAACATTTGGGCATGTTTACCTGGGATTCAATAGtgatagtggacaattgagtgcaattaaagaagtcagggttgtctgtgatgaccaatcatcaaaggagtgcctcaaacaacttaatcagGAGATCCATTTGCTCAGTCAGCTTTCACATCCAAACATCGTTCAATACTATGGGAGTGATTTGGGGGAAGAAACACTTTCCGTTTATTTGGAATATGTCTCTGGTGGTTCTATTCATAAATTACTTCAGGAATATGGGGCCTTCAAGGAGCCTGTTATTCAAAATTATACCAGGCAGATTGTCTCTGGACTTTCCTATCTTCATGGGAGAAATACAGTACATAGggatatcaaaggggctaacatactagttgatcctaatggtgaaatcaagctggcagactttggaatggctaaacatataaattcttcttcctccatgctatctttcaaagggagtccatactggatggcacccgaggttgtaatgaatacaaatggctatagtcttcctgttgatatatggagcttgggatgcacaattcttgaaatggcaacatcaaagcctccttggaatcagtatgaaggggtagctgcaatatttaaaattggtaacagcagagatatgcctgaaattcctgatcatctctcaagcgaggcaaagaaattcattcagctatgcttacaaagagatccatcagcccgcccaacagcccagatgttactagagcatccctttattcgagatcagtcattaacaaaagctacaaatgtcagaataaccagggatgctttcccctgcatgtttgatggaagtcggacgcctccgCCAGTTTTAGATCATTCCAATAGAACAAGTTTAACTTCATTGGATGGAGATTATGCAACAAAGCCAGTTCCTGTAACTTCACGAGCAGAAAGGAGCCCAAGAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCCATTGCGACAGTACGAGCCAGCGCACAAGAGCTGTTTCCTTTCTCCTCCTCACCCAACTTACACTTTGATGGGGCAGAATACACTCCCCTCATATCCAGTGAGATCAAATGCCACGTTCACTCTTGACCCTTTTCAGGAAACTTCTTTTTACAAAGCCCACACGCCCGGTGGATCCCCAAGAAGACTCATTTGA 1818 0.3372 MPTWWGKKSSKTKDQQHQQQQDHPHGAAATTTLLHFNFIKPKPNPKPSKSFDDVVRNSPRASRDFGSSAAVDQGLPLPRPSVFSTQSFAIDQGLVFGSASVSGSSVSSSGSYDDHPQINASRGQGDMKFLVRSKSPGPGSRGPTSPTSPLHPKLLGLSLDSPTGRQEGECHPLPLPPGSPTSPSSSLPSMRANGMTEHTTSNLSKWKKGKLLGRGTFGHVYLGFNSDSGQLSAIKEVRVVCDDQSSKECLKQLNQEIHLLSQLSHPNIVQYYGSDLGEETLSVYLEYVSGGSIHKLLQEYGAFKEPVIQNYTRQIVSGLSYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSSSMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTILEMATSKPPWNQYEGVAAIFKIGNSRDMPEIPDHLSSEAKKFIQLCLQRDPSARPTAQMLLEHPFIRDQSLTKATNVRITRDAFPCMFDGSRTPPPVLDHSNRTSLTSLDGDYATKPVPVTSRAERSPRDNTRMITSLPVSPCSSPLRQYEPAHKSCFLSPPHPTYTLMGQNTLPSYPVRSNATFTLDPFQETSFYKAHTPGGSPRRLI 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02054 605 MobiDBLite consensus disorder prediction 184 202 - -
Gma04g02054 605 ProSitePatterns Protein kinases ATP-binding region signature. 212 235 IPR017441 GO:0005524
Gma04g02054 605 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 588 - -
Gma04g02054 605 Gene3D Transferase(Phosphotransferase) domain 1 203 481 - -
Gma04g02054 605 PANTHER MAP KINASE KINASE KINASE 1 588 - -
Gma04g02054 605 MobiDBLite consensus disorder prediction 493 507 - -
Gma04g02054 605 MobiDBLite consensus disorder prediction 491 524 - -
Gma04g02054 605 MobiDBLite consensus disorder prediction 100 202 - -
Gma04g02054 605 Pfam Protein kinase domain 207 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g02054 605 SMART serkin_6 206 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g02054 605 MobiDBLite consensus disorder prediction 38 76 - -
Gma04g02054 605 CDD STKc_MEKK1_plant 205 462 - -
Gma04g02054 605 MobiDBLite consensus disorder prediction 1 26 - -
Gma04g02054 605 ProSiteProfiles Protein kinase domain profile. 206 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g02054 605 SUPERFAMILY Protein kinase-like (PK-like) 203 542 IPR011009 -
Gma04g02054 605 MobiDBLite consensus disorder prediction 100 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02054 Gma-Chr4 50982457 50988122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02054 1 525 MAP Kinase Kinase Kinase AT1G53570 56.498 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gma04g02054 Pkinase 3.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02054 K04421 - gmx:100780263 1135.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02054 04 50982457 50988122 Gma06g01363 06 12843551 12849512 GST
Gma05g01887 05 40342159 40347940 Gma04g02054 04 50982457 50988122 PCT
Gma08g00148 08 1244233 1250252 Gma04g02054 04 50982457 50988122 PCT
Gma04g02054 04 50982457 50988122 Gma05g01887 05 40342159 40347940 PCT