Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02048 ATGAACGAAGCCCAAATTGAAATTACCATTCCTCACTTGTTCAGATGCCCCATCAGCTTGGACTTGTTCGAAGATCCAGTGACTTTGTGCACAGGCCAAACCTATGACAGATCAAGCATAGAGAAATGGTTTTCCACAGGAAATCTCACATGCCCCGTGACAATGCAGAAGCTTCATGATCCATCCATTGTTCCCAACCACACTCTTCGCCACTTGATCGACCAGTGGCTCCAATTGGGTCCCCAATTTGGTAACTCAGCCACTATTGATTATTTAGCTGCACTTAAGCACACCCTTGAATCACCCCAATTGGAAAACAAGCTCCAAGCACTCGAGAAAATTAGAGTCCTCTCTGATGAGTATTGCTCCTTCAGAAAATCTTACTTCCACCAACTGAGTTTCTTGCCACTGCTTTTGGAACTAGTTTTTGGTTCTCGGCTCTCAAAAAGTCACAACAGGGAGTTCACTGAGCTAGCACTTTCTTGCATTCTAAAGCTGTTGCCTCTTGTGAGTTTGGAGCCTCTAAATATGATCAAAGATGAGTCTAAGCTAGCAACTTTTTTGCTACTATTTGAAAAGGGAACTAGCTCGGTTAAGACTAGTCTTTGCCATATCATAGATTCAATAGCATCACCACAAACAGAAGAGGTATGTCACATGCTTGGACACTCTCACAAACTAGTGCATGAGATCGTTGTACTTGTTCGCCAAAATTGTGAGGTTTCCAAGGTTGCAATTAAGGCCATGTTAGCATTATGTTCCTTGCAATCTAACAGAGAGAATTTGGTGAGGGAAGGAGCAATTGATGGGGTCATAACATACATTTCAGGTTGTGAAGCAAGGCAGAAGAACGCTGCTCCATTGGCGATGGCAATAATAAAGAAGCTTTTGGTGCTAGAGAGTGCTAAAGAGGCGTTGGTGAATCACCCTAATGGAGTTGAAACTCTGGTGAAGATGGTTTTCAGGGTGTGCAATCAAGAGTGTAGTGAGAGTGCTGTTGGGATACTTGCAATTATTTGTTGTGATTTTGGGCGTGCAAGAGAGGAAGCAATTGAAGCTGGAGTTTTGACTCAGTTGCTGTTTCTTCTGCAGAGTCAGTGTGGCACCAAAACTAAAACAAAGGCAAGAATGCTGCTCAAGTTGCTAAGATCCAAGTGGATTGAGGAACCAAAACAGGTGTAG 1182 0.4323 MNEAQIEITIPHLFRCPISLDLFEDPVTLCTGQTYDRSSIEKWFSTGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGPQFGNSATIDYLAALKHTLESPQLENKLQALEKIRVLSDEYCSFRKSYFHQLSFLPLLLELVFGSRLSKSHNREFTELALSCILKLLPLVSLEPLNMIKDESKLATFLLLFEKGTSSVKTSLCHIIDSIASPQTEEVCHMLGHSHKLVHEIVVLVRQNCEVSKVAIKAMLALCSLQSNRENLVREGAIDGVITYISGCEARQKNAAPLAMAIIKKLLVLESAKEALVNHPNGVETLVKMVFRVCNQECSESAVGILAIICCDFGRAREEAIEAGVLTQLLFLLQSQCGTKTKTKARMLLKLLRSKWIEEPKQV 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02048 393 Gene3D - 87 292 IPR011989 -
Gma04g02048 393 SUPERFAMILY RING/U-box 6 78 - -
Gma04g02048 393 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Gma04g02048 393 Gene3D - 293 385 IPR011989 -
Gma04g02048 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 80 IPR013083 -
Gma04g02048 393 CDD RING-Ubox_PUB 14 56 IPR045210 -
Gma04g02048 393 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Gma04g02048 393 PANTHER WDSAM1 PROTEIN 9 385 IPR045185 GO:0061630
Gma04g02048 393 SUPERFAMILY ARM repeat 90 369 IPR016024 -
Gma04g02048 393 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Gma04g02048 393 PANTHER OS02G0542800 PROTEIN 9 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02048 Gma-Chr4 50928951 50930353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02048 8 386 U-box Gene Family AT3G19380 31.450 1.02e-41 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02048 - - gmx:100819468 755.747