Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02033 ATGAGCAACAACGCCTCCCGGAAGCGCGCGCCGCCGCCTCCGTCCCAACCTCCGCCGGCGAAGCAAGCCCTAATGACTCAGGAAGAAGAGTTCATGGACGAAGACGTGTTCATAAACGAAACCCTCGTCTCCGAGGACGAAGAATCCCTCATTCTCCGCGACATTGAGCAGCGCCAGGCCCTCGCCAACCGCCTCTCCAAGTGGACACGTCCTCCTCTCTCCGCCGGCTACGTCGCCCAATCTCGTAGCGTCCTTTTTCAGCAGCTAGAGATTGATTACGTGATTGCAGAGAGTCACAGGGAGTTGCTGCCGAACTCGTCTGGACCTGTCGCCATTATCAGAATATTTGGAGTTACTAAGGAAGGACACAGTGTTTGTTGCAATGTTCATGGGTTTGAACCATATTTCTACATCTGTTGCCCTCCTGGAATGGGTCCAGATGATATCTCCCATTTTCATCAAACTCTCGAGGGAAGGATGAGAGAAGCCAATAGAAACAGTAATGTGGGAAAATTCGTTCGCCGTATTGAAATGGTGCAGAGAAGGAGTATTATGTACTATCAGCAATCCAATTCCCAACCCTTTCTCAAAATTGTAGTTGCACTCCCAACAATGGTTGCCAGCTGCCGTGGTATTCTTGATAGGGGTATTCAACTTGATGGTCTGGGAATGAAGAGCTTCTTGACTTATGAAAGCAATGTACTTTTTGCCCTTCGCTTCATGATTGATTGTAACATAGTTGGTGGAAATTGGATTGAAATTCCTGCTGGAAAATATAAGAAAACAGCGAAAAGCTTGTCTTACTGCCAGTTAGAGTTTGATTGCTTGTATTCTGAATTGATTAGTCATGCTCCAGAAGGGGAATATTCAAAGATGGCTCCGTTTCGCATTTTGAGTTTTGACATCGAGTGTGCTGGTCGTAAAGGTCATTTTCCTGAGCCTACCCATGATCCTGTTATCCAGATTGCTAATTTGGTTACTTTACAAGGAGAAGACCAGCCATTTATTCGTAATGTGATGACCCTTAAATCATGTTCTCCTATCGTTGGTGTTGATGTGATGCCATTTGAAACAGAAAGAGAAGTCCTGCTGGCTTGGAGGGATTTTATTCGTGAAGTGGACCCTGATATTATTATTGGATACAACATTTGCAAATTTGACTTGCCATATCTTATTGAGAGAGCTTTGAACCTGAAGATAGCAGAATTTCCAATTCTGGGTCGTATCAGGAACAGTAGAGTTCGAGTAAAGGATACAACTTTCTCATCAAGGCAGTACGGAACCAGGGAAAGTAAAGAAGTTGCAGTAGAAGGGAGAGTTCAGTTTGATTTACTCCAGGTTATGCAAAGAGACTACAAATTAAGTTCTTATTCACTGAATTCTGTGTCATCACACTTCCTTTCTGAGCAGAAAGAGGATGTTCATCATTCAATTATATCCGATCTTCAGAATGGAAATGCAGAAACTAGGAGGCGCCTTGCTGTGTATTGTTTGAAGGATGCATATCTCCCTCAGCGGCTTTTGGATAAATTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTAACAGGTGTCCCAATTTCTTTTCTACTTTCCAGAGGCCAAAGCATTAAGGTACTTTCTCAACTTCTTAGGAAGGCAAGGCAGAAGAATCTGGTCATTCCTAATGCCAAACAGGCTGGGTCTGAACAAGGAACATTTGAAGGTGCCACTGTATTGGAGGCAAGGGCTGGATTTTATGAAAAACCAATTGCTACTTTAGATTTTGCATCCTTGTATCCATCTATTATGATGGCCTATAACTTATGTTATTGCACTCTGGTGATCCCTGAAGATGCTCGCAAGCTCAACATACCTCCAGAGTCTGTGAACAGAACTCCATCTGGTGAAACATTTGTTAAATCAAATTTGCAGAAGGGAATACTTCCTGAAATACTTGAAGAGCTATTAACAGCCCGTAAAAGGGCAAAAGCAGACTTAAAGGAGGCCAAGGATCCCCTGGAGAAGGCAGTGCTAGATGGTAGACAGCTAGCCCTGAAGATTAGTGCCAATTCTGTGTATGGGTTTACAGGGGCTACCATTGGTCAGTTACCATGTTTAGAGATATCATCGAGTGTAACAAGCTATGGTCGACAAATGATCGAGCACACGAAAAAAATTGTGGAAGACAAATTTACGACAGTTAATGGCTATGAACACAATGCCGAGGTAATATATGGAGACACAGATTCAGTCATGGTACAATTTGGTGTTTCTGCTGTAGAAGAAGCTATGAACTTGGGGAGAGAAGCTGCTGAATATATTAGTGGAACTTTCACAAAACCCATCAAACTAGAATTTGAGAAGGTTTACTATCCATATCTCTTGATTAGCAAGAAGAGATATGCTGGATTGTTTTGGACAAAACCAGACAACTTTGACAAAATGGACACTAAAGCAGGTATTGAAACAGTTCGAAGAGACAATTGTTTATTGGTAAAAAACCTGGTGAACGATTGCCTTCACAAAATATTGATTGACAGGGACATTCCTGGGGCAGTCCAGTATGTCAAGAATGCAATTTCAGATCTTCTCATGAATCGTATGGACTTATCACTTCTAGTTATTACAAAGGGTTTAACGAAGACAGGAGATGATTATGAAGTAAAGGCAGCTCATGTTGAACTTGCTGAAAGGATGCGCAAGAGAGATGCTGCCACTGCTCCAAATGTTGGAGATAGAGTACCATATGTTATTATTAAAGCTGCAAAAGGTGCTAAGGCATACGAGAAATCAGAGGATCCTATCTATGTTCTAGAGAACAACATACCAATAGATCCTCAGTACTATCTTGAGAATCAAATTAGCAAGCCAATTATGAGAATTTTTGAGCCAATTCTGAAGAATGCTAGCAAAGAACTTCTCCATGGAAGTCATACAAGATCTATTTCTATTTCTACTCCGGCAAACAGTGGCATATTGAAATTTGCTAAGAAACAGCTTACCTGCATTGGTTGTAAAGCTTTACTTGGCAATGGTCATCACACTCTCTGTTCACATTGCAAAGGAAGGGAGGCTGAGCTTTACTGTAAAACAGTATCTCAAGTGTCTGAGCTGGAGATGCTTTTTGGGAGGTTGTGGACACAGTGTCAGGAGTGCCAAGGTTCACTTCATCAGGATGTTCTCTGCACAAGTCGGGATTGTCCAATTTTTTACCGACGAAAAAAGGCACAGAAAGATATGGCTGAAGCAAAATTGCAATTGGACCGATGGAACTTCTAA 3264 0.4219 MSNNASRKRAPPPPSQPPPAKQALMTQEEEFMDEDVFINETLVSEDEESLILRDIEQRQALANRLSKWTRPPLSAGYVAQSRSVLFQQLEIDYVIAESHRELLPNSSGPVAIIRIFGVTKEGHSVCCNVHGFEPYFYICCPPGMGPDDISHFHQTLEGRMREANRNSNVGKFVRRIEMVQRRSIMYYQQSNSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFLTYESNVLFALRFMIDCNIVGGNWIEIPAGKYKKTAKSLSYCQLEFDCLYSELISHAPEGEYSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEDQPFIRNVMTLKSCSPIVGVDVMPFETEREVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERALNLKIAEFPILGRIRNSRVRVKDTTFSSRQYGTRESKEVAVEGRVQFDLLQVMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKARQKNLVIPNAKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVIPEDARKLNIPPESVNRTPSGETFVKSNLQKGILPEILEELLTARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKIVEDKFTTVNGYEHNAEVIYGDTDSVMVQFGVSAVEEAMNLGREAAEYISGTFTKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDNFDKMDTKAGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQISKPIMRIFEPILKNASKELLHGSHTRSISISTPANSGILKFAKKQLTCIGCKALLGNGHHTLCSHCKGREAELYCKTVSQVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLDRWNF 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02033 1087 PRINTS DNA-directed DNA-polymerase family B signature 677 689 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gma04g02033 1087 PRINTS DNA-directed DNA-polymerase family B signature 738 746 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gma04g02033 1087 PRINTS DNA-directed DNA-polymerase family B signature 585 598 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gma04g02033 1087 Gene3D - 815 970 IPR042087 -
Gma04g02033 1087 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 82 1087 - -
Gma04g02033 1087 Gene3D DNA Polymerase, chain B, domain 1 89 265 - -
Gma04g02033 1087 Pfam DNA polymerase family B 526 960 IPR006134 GO:0000166|GO:0003677
Gma04g02033 1087 SUPERFAMILY Ribonuclease H-like 108 532 IPR012337 -
Gma04g02033 1087 Coils Coil 1068 1087 - -
Gma04g02033 1087 ProSitePatterns DNA polymerase family B signature. 740 748 IPR017964 GO:0000166|GO:0003676
Gma04g02033 1087 SMART polmehr3 293 752 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gma04g02033 1087 MobiDBLite consensus disorder prediction 1 23 - -
Gma04g02033 1087 Gene3D Helix hairpin bin 641 693 - -
Gma04g02033 1087 CDD POLBc_delta 567 961 - -
Gma04g02033 1087 Gene3D Palm domain of DNA polymerase 568 797 IPR023211 -
Gma04g02033 1087 Pfam DNA polymerase family B, exonuclease domain 119 462 IPR006133 -
Gma04g02033 1087 CDD DNA_polB_delta_exo 289 518 - -
Gma04g02033 1087 TIGRFAM pol2: DNA polymerase (pol2) 348 958 - -
Gma04g02033 1087 Gene3D - 294 512 IPR036397 GO:0003676
Gma04g02033 1087 SUPERFAMILY DNA/RNA polymerases 551 962 IPR043502 -
Gma04g02033 1087 Pfam C4-type zinc-finger of DNA polymerase delta 997 1068 IPR025687 -
Gma04g02033 1087 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 82 1087 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02033 Gma-Chr4 50751080 50769834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02033 15 1087 Core DNA Replication Machinery Family AT5G63960 81.885 0.0 1873
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02033 K02327 - gmx:100817379 2098.55