LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma04g02031	ATGAAGTTAATCGGCGACGGTGCCGGTGGCCGGAAAGTTCTCGTCGGCGTTAAATTAGATCCTCGCAGCCGCGAATTGCTGACGTGGGCTCTCGTCAAGGTCGCCGAGCCCGGCGACCTCGTCATTGCTCTTCACGTCCTTGACACCATCACTGAGGGAACAGCGTCGCTGTTATCTCTCGTGAAGACATTCGATTCCGTTCTCGCCGTCTACGAAGGTTTCTGCAACCTGAAACAGGTTGGGCTGAGGCTTAAAGTGTGTCGCGGTGACTCGGTTCGGAAGGCCTTGGTGCAAGAGGCGAAGGCGTTTGGCGTTTCCACCGTGATTTTGGGAACTTCGAAATCTCATCACACTATTCGGTCTTCCGCGTGGGTTGCAAAGTACTGCGCGAAGAAATTGCCCAAGTGTATCTCTGTCTTCTCCGTTGATAATGGCAAAATCGCGTTCCGGAGAGAAGCTAATGGAAATTGCAGTGATCGAGAGAAATTGTGTGAAGGATCGAGTTTGTCGTCAAAATCATTGGTGGTTTATACAAATAAGAATATGAAGAGTTGTGGAAGTTGTGAATTGCAAGAGTGTTCTGGAAATGAGTTTGAGCAAGGGTTGTGTGGGGATGTTGAGAAGGAGAATCCGCTTGCTTTGGTTCCGTTTAAGAAGCTTGATGATGCTCCTTGTTTTTCGGTTTTGGTGGATAACTCGAAGCATAAACCTGGTTGGTCACTGCTTCGTCACGTGTTTCATCACAAGAAGCATACCCATAAGTCTTCTATGAAGAATACGTTTGTTTTTCAAAGGGCATTGCGGCAGCCGAATTGTCATTCTTCTGCTGTGGTCCATCCTGATCATAAACAAATTAGTATTGAGCAGATTGATGATTCCCCCCTTGATGGGGTGAGTGGTGCCATTGTACCATTTGAATCTACTACAACTACTATCTTTACTCTTCCCTCCATTTGCAGTGATTTGAGTAGCCTTCCCGAAGAATTGTTGGTATTACAAGAAAAGTACACGTCCTCGTGCCGATTATATAGTTTGCAGGAACTTGTATCTGCGACCTCCAACTTTGTATCTGAAAATTTGGTTGGCAAAGGTGGCTGTAGTTATGTTTACAGAGGATGTCTTCCAGATGGCAAGGAATTGGCTGTGAAAATTTTGAAGCCATCTGAAAACGTGATAAAGGAGTTTGTTCAGGAAATTGAGATCATTACAACTTTGCGCCACAAGAACATAATATCTATTTCTGGCTTTTGTTTAGAGGGCAACCATTTGCTACTAGTGTATGATTTTTTATCAAGGGGAAGCCTAGAAGAAAACCTTCATGGCAACAAGGTGGACTGTAGTGCATTTGGTTGGCAAGAAAGGTACAAGGTGGCCGTGGGTGTAGCTGAGGCATTGGATTATCTGCATAATGGCTGTGCTCAGGCTGTGATCCATAGGGATGTGAAATCTTCTAATATCCTTCTTGCAGATGATTTTGAGCCTCAGCTTTCAGATTTTGGACTGGCTAGTTGGGGTTCATCTTCTTCCCATATTACTTGTACTGATGTGGCCGGAACTTTTGGATACCTCGCACCTGAGTACTTTATGCATGGTAGAGTGACTGATAAAATTGACGTATATTCTTTTGGTGTTGTACTCCTCGAGCTTCTCTCAAATAGGAAGCCCATTAACAATGAATCTCCAAAGGGCCAGGAGAGCCTTGTTATGTGGGCAACACCAATTTTGGAAGGTGGGAAGTTTTCCCAGTTGCTTGATCCAAGCCTGGGCAGTGAATACAACACTTGCCAGATCAAGAGAATGATTTTGGCCGCTACTCTCTGCATTAGACGCATTCCTAGATTGCGGCCTCAAATCAACCTTATATTGAAACTTCTGCATGGTGATGAGGAGGTGATAAGATGGGCAGAACAAGAAGTTAATGCTCCACAGGAACTTGATGGATGTGATGAGGAACCAGTTCCAACTAACATTCAGTCCCACCTGAACCTTGCTTTACTAGACTTGGAGGATGATACGGTTTCTATCAGTAGCACTGAGCAGAGTGTCTCTCTGGAGGACTATTTGCAAGGAAGATGGAGTCGCTCTTCAAGTTTTGACTAA	2100	0.4495	MKLIGDGAGGRKVLVGVKLDPRSRELLTWALVKVAEPGDLVIALHVLDTITEGTASLLSLVKTFDSVLAVYEGFCNLKQVGLRLKVCRGDSVRKALVQEAKAFGVSTVILGTSKSHHTIRSSAWVAKYCAKKLPKCISVFSVDNGKIAFRREANGNCSDREKLCEGSSLSSKSLVVYTNKNMKSCGSCELQECSGNEFEQGLCGDVEKENPLALVPFKKLDDAPCFSVLVDNSKHKPGWSLLRHVFHHKKHTHKSSMKNTFVFQRALRQPNCHSSAVVHPDHKQISIEQIDDSPLDGVSGAIVPFESTTTTIFTLPSICSDLSSLPEELLVLQEKYTSSCRLYSLQELVSATSNFVSENLVGKGGCSYVYRGCLPDGKELAVKILKPSENVIKEFVQEIEIITTLRHKNIISISGFCLEGNHLLLVYDFLSRGSLEENLHGNKVDCSAFGWQERYKVAVGVAEALDYLHNGCAQAVIHRDVKSSNILLADDFEPQLSDFGLASWGSSSSHITCTDVAGTFGYLAPEYFMHGRVTDKIDVYSFGVVLLELLSNRKPINNESPKGQESLVMWATPILEGGKFSQLLDPSLGSEYNTCQIKRMILAATLCIRRIPRLRPQINLILKLLHGDEEVIRWAEQEVNAPQELDGCDEEPVPTNIQSHLNLALLDLEDDTVSISSTEQSVSLEDYLQGRWSRSSSFD	699

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma04g02031	699	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	476	488	IPR008271	GO:0004672\|GO:0006468
Gma04g02031	699	SUPERFAMILY	Protein kinase-like (PK-like)	336	625	IPR011009	-
Gma04g02031	699	PANTHER	ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE	7	693	-	-
Gma04g02031	699	SMART	serkin_6	355	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gma04g02031	699	Pfam	Universal stress protein family	11	134	IPR006016	-
Gma04g02031	699	Gene3D	Phosphorylase Kinase; domain 1	324	429	-	-
Gma04g02031	699	ProSiteProfiles	Protein kinase domain profile.	355	632	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gma04g02031	699	Gene3D	Transferase(Phosphotransferase) domain 1	430	643	-	-
Gma04g02031	699	Gene3D	HUPs	10	142	IPR014729	-
Gma04g02031	699	Pfam	Protein kinase domain	357	564	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma04g02031	Gma-Chr4	50738153	50741233	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma04g02031	338	621	Trihelix Transcription Factor Family	AT1G68690	46.552	2.69e-77	259

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Gma04g02031		Pkinase	3.6e-42	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma04g02031	-		-	gmx:100815722	1387.47

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Gma04g02031	04	50738153	50741233	Gma04g02031	04	50738153	50741233	ECH
Gma04g02031	04	50738153	50741233	Gma06g01384	06	13034986	13038644	GST
Gma14g01435	14	30519909	30523787	Gma04g02031	04	50738153	50741233	PCT
Gma04g02031	04	50738153	50741233	Gma14g01435	14	30519909	30523787	PCT

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