Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02010 ATGGGAGACGACAGTGGCAGCAACCGGTCAAAGCCGGAGTGGCTGCAGCAGTATGATCTAATAGGGAAGATTGGAGAAGGCACCTACGGTCTCGTCTTCCTCGCTCGCATCAAGTCTTCCACCAATCGCGGAAAATCCATCGCCATAAAAAAATTCAAGCAATCCAAGGATGGCGATGGTGTCTCTCCCACCGCCATACGTGAAATCATGTTACTCAGGGAGATAACGCACGAGAATGTTGTGAAGCTTGTGAATGTTCACATTAATCATATGGACATGTCTCTCTATCTGGCTTTTGATTATGCAGAACACGACCTTTTTGAAATAATAAGACATCATAGGGACAAAGTCAATCAATCCATTAACCAGTATACTGTTAAATCGTTACTCTGGCAGTTGCTCAATGGACTAAACTATCTACACAGTAATTGGATAATACATCGGGACTTAAAGCCATCAAATATATTGGTTATGGGTGAAGGAGAGGAACATGGAGTTGTTAAAATTGCTGACTTTGGACTTGCAAGGATATATCAAGCACCTTTGAAGCCATTATCTGAAAATGGGGTTGTTGTTACTATTTGGTATCGTGCTCCTGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACTTTAAAGCCGCTATTCCAAGGTGCAGAAGTCAAAGCTACACCAAATCCCTTTCAGCTTGACCAACTTGACAAGATATTCAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCAAATCTTCCCCATTGGCAACAAGATTCACAACATATACAAGGACACAAATATGACAATGCTAGCCTATGTAGTGTTTTACAACTATCTCCAAAAAGTCCTGCATATGACCTCTTGTCAAAGATGCTTGAATATGATCCACGAAAGCGCATAACAGCAGCCCAAGCTTTGGAGCATGAGTATTTCAAAATTGAACCACTACCTGGGCGGAATGCACTTGTACCCTGCCAACCTGGAGACACATTTGTGAATTATCCCACACGTCCAGTGGATACAACAACAGATTTTGAAGGGACAGCCAACATGCAACCTTCACAGCCGGTTTCGTCTGGAGCTGCAGTTTCTGGCAACATGCCTGGTGGCAGGGATGGGTGCTGGAATGAATCCTGGTGGCATCCCAATGCAACGAGGTGTTCCACAGCAACAGTTGAGAAGAAAAGATCAAATGGGTATGCCAGGATACCCTCCACAGCAGAAGTCAAGACGTATATAAGGTTGTGCTGGTAG 1305 0.4391 MGDDSGSNRSKPEWLQQYDLIGKIGEGTYGLVFLARIKSSTNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHMDMSLYLAFDYAEHDLFEIIRHHRDKVNQSINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLANLPHWQQDSQHIQGHKYDNASLCSVLQLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKIEPLPGRNALVPCQPGDTFVNYPTRPVDTTTDFEGTANMQPSQPVSSGAAVSGNMPGGRDGCWNESWWHPNATRCSTATVEKKRSNGYARIPSTAEVKTYIRLCW 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02010 434 CDD STKc_CDK8_like 17 328 - -
Gma04g02010 434 PANTHER CELL DIVISION PROTEIN KINASE 7 385 - -
Gma04g02010 434 Gene3D Transferase(Phosphotransferase) domain 1 101 341 - -
Gma04g02010 434 SUPERFAMILY Protein kinase-like (PK-like) 13 329 IPR011009 -
Gma04g02010 434 Pfam Protein kinase domain 18 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g02010 434 SMART serkin_6 18 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g02010 434 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Gma04g02010 434 PANTHER CYCLIN-DEPENDENT KINASE E-1 7 385 - -
Gma04g02010 434 Gene3D Phosphorylase Kinase; domain 1 5 100 - -
Gma04g02010 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Gma04g02010 434 ProSiteProfiles Protein kinase domain profile. 18 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02010 Gma-Chr4 50553279 50560992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02010 11 387 Core Cell Cycle Gene Families AT5G63610 81.167 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Gma04g02010 Pkinase 2.6e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02010 K02208 - gmx:100813433 789.645