Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01953 ATGGATCCGGACGCATTCACCGCCAGCCTATTCAAGTGGGACCCACGTACCGTCCTCCCACCCGCTCCGGCGCCGCCCCCGCGCCCGTCCCTCCTCGAATACGCGATGGCTCCCCCGCCGGTGACCACGGCGTTCCACCCTGCGAGGACGGCGGCTCCGCGCGAGCTCGGAGGACTGGAGGAGCTTTTCCAGGCCTACGGCATCCGCTACTACACGGCGGCGAAGATCGCCGAGCTTGGGTTCACGGTGAGCACGCTGGTGGACATGAAAGACGAGGAGCTCGACGACATGATGAACAGCCTTTCCCAGATTTTCCGCTGGGACCTCCTCGTCGGCGAGCGCTACGGCATCAAAGCCGCCGTCAGAGCCGAACGCCGCCGCGTCGAAGACGACGACATCAAGCGCCGCAACAACAACAGCAACAACCTCCTCTCCACGGACACCACCACCAACGCCCTCGACGCCCTCTCTCAAGAAGGGTTGTCAGAGGAGCCGGTGGTGCAACGAGAGAAGGAGGCGGTGGGGAGCGGGGGAGGGAGCACGTGGGAGGTGGTGGCAGCGGAGGAGAGGAGTAAGCAGCAGAGGAGGCGGAGGACGAGGATGAAGACGAATCTTCATCACGATGAGAATGAGGAGCTTGAAGATGATGAAGGGGAAGAGAATGATGAAGGGAACATTAACAGAGGTGGTGGTTGTGAGAGGCAAAGAGAACACCCTTTCATCGTGACAGAACCTGGCGAAGTTGCACGTGGAAAGAAGAACGGTTTGGACTATCTGTTTCATCTCTACGAGCAATGCCGTGAGTTCTTGATGCAGGTTCAGGCCATTGCCAAGGACCGCGGTGAAAAATGCCCCACCAAGGTATATTCATTCTTCTTCGTTGAGTTCTTCCCATACCATACCCTAACCCCCTTCGTTTATGTTAATTTGTCTCCTCCCTCGTGCCTTTCTGCTTCTTCTGATCACTCTGACTCTGCTACTCACTTGTGTTGTTGTGTTGTTCCCTTCATGAACCGTTTGAATAATACTGTGTTGTTGTCACCGTGA 1047 0.5712 MDPDAFTASLFKWDPRTVLPPAPAPPPRPSLLEYAMAPPPVTTAFHPARTAAPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKDEELDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRVEDDDIKRRNNNSNNLLSTDTTTNALDALSQEGLSEEPVVQREKEAVGSGGGSTWEVVAAEERSKQQRRRRTRMKTNLHHDENEELEDDEGEENDEGNINRGGGCERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLMQVQAIAKDRGEKCPTKVYSFFFVEFFPYHTLTPFVYVNLSPPSCLSASSDHSDSATHLCCCVVPFMNRLNNTVLLSP 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01953 348 MobiDBLite consensus disorder prediction 187 240 - -
Gma04g01953 348 PANTHER PROTEIN LEAFY 1 290 IPR002910 GO:0003677|GO:0006355
Gma04g01953 348 Pfam Floricaula / Leafy protein SAM domain 55 131 IPR035079 -
Gma04g01953 348 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 229 292 IPR035209 GO:0003677
Gma04g01953 348 MobiDBLite consensus disorder prediction 223 240 - -
Gma04g01953 348 PANTHER PROTEIN LEAFY 1 290 - -
Gma04g01953 348 Gene3D Protein LEAFY 230 298 IPR038276 -
Gma04g01953 348 MobiDBLite consensus disorder prediction 126 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01953 Gma-Chr4 49986844 49988377 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01953 1 309 Orphan Transcription Factor Family AT5G61850 55.901 1.43e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Gma04g01953 SAM_LFY 9.3e-45 CL0003
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01953 - - gmx:100798196 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01953 04 49986844 49988377 Gma04g01953 04 49986844 49988377 ECH