Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01950 ATGAGGGCCCTTCTCCGGAATCACCTCTTGCATTTGTCACGTTCTCCAGCTCGCACGCTTCTTGTTCGGCTTCAAGCGTGCGAGCTGTCATCGTCATCTTCTTCTCCTCCTCATACCTCCCGAGAGGTTAGCGTTTCGGTGTGGTGCAACGCTTTCGGGGATTTTAACTTCCTCTCCGAGCGCCTCCTGGACGCACTCGGTTCAAGCGACATTCCAGTCACCCACTTTCCTCGTGGTCGAAAGAGTTATATCAACGTTGATATCATGTTTTGGGCATTCAACAATCCTCCACCTGCACATTTCTTTCTGATATCCAGTGATATAGGTTTTGCTGGCTTATTACACCGGTTAAACTTGAATAATTACTGTATCTTGCTTGCTGGCTCAAGGAATGCTCGTGTTCTCTCCATGGCAACAACTATAACGTGGCAATGGTATAAATTGCTTAGGGGAGAAAATCTTATTGCAAAACATTTCAACCATGCTCCAGATGGTCCATATGCTTCTTGGTATGGAAACTTTGGGGTGCCCCTTGAAAACCCATTCCCAGCCCCAGATTCCTTAAAAATGAGTTCTAAAGGCTCATCTGATGATGACATTGTTGGGTCTGAGGATGCGAGTCGTAAAAGTCAGGAAAGATATACAACTTCAATGAATCGCTCTGCTGGAAATGATCAGACAGCAGTGGATGACATTGGTACTGCAAACTATGAATCTGGAAAGCCTGAGTTGTTTTCTAGCAGTTCCTTTTGGAATGACATGGAATCTTTTATTTTCACCCTCAGAGGATCACTTATTGTTTCCCAGTCAAAAAACAGGGAGGATATGGCACGTAAATTACGGAAGAATGGACCCCCAGTTTTTAGATCTCTGTCTAAAAAAGATATCCTTCAATTGTTGGAGTTATTAATATCAGAGAAAAAGTGGTTGGAGGAAAGCCCCACCCAAACATTTCCTTTTCAGCTAAAACCAGTTCACAAGGACTCATTGGAATATTCAGAGAGGTCTAGATATGATATATTAGATGATTGTGATAGATTTGTACATGAGATATTGAGGGAACACCCAGATGGTTTTAAAATCAGTTCTTTTCCAAGATTTTTTGTTGCTAGGTATGGCTATCATCTTGATTTACAGAAGCTTGGTTACCGAAAGTTAACAACCTTACTACAGATAATGACGGGAGTTAAAGTAGAGTCCAATTATATTTATAGATCCTACTAA 1224 0.4183 MRALLRNHLLHLSRSPARTLLVRLQACELSSSSSSPPHTSREVSVSVWCNAFGDFNFLSERLLDALGSSDIPVTHFPRGRKSYINVDIMFWAFNNPPPAHFFLISSDIGFAGLLHRLNLNNYCILLAGSRNARVLSMATTITWQWYKLLRGENLIAKHFNHAPDGPYASWYGNFGVPLENPFPAPDSLKMSSKGSSDDDIVGSEDASRKSQERYTTSMNRSAGNDQTAVDDIGTANYESGKPELFSSSSFWNDMESFIFTLRGSLIVSQSKNREDMARKLRKNGPPVFRSLSKKDILQLLELLISEKKWLEESPTQTFPFQLKPVHKDSLEYSERSRYDILDDCDRFVHEILREHPDGFKISSFPRFFVARYGYHLDLQKLGYRKLTTLLQIMTGVKVESNYIYRSY 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01950 407 CDD PIN_limkain_b1_N_like 40 127 - -
Gma04g01950 407 PANTHER EMB|CAB71880.1 50 188 - -
Gma04g01950 407 PANTHER EMB|CAB71880.1 234 406 - -
Gma04g01950 407 PANTHER LIMKAIN B LKAP 50 188 IPR024768 GO:0005777|GO:0010468|GO:1903231
Gma04g01950 407 PANTHER LIMKAIN B LKAP 234 406 IPR024768 GO:0005777|GO:0010468|GO:1903231
Gma04g01950 407 Pfam OST-HTH/LOTUS domain 341 399 IPR025605 -
Gma04g01950 407 MobiDBLite consensus disorder prediction 185 228 - -
Gma04g01950 407 Gene3D - 335 403 IPR041966 -
Gma04g01950 407 CDD LOTUS 341 398 - -
Gma04g01950 407 ProSiteProfiles OST-type HTH domain profile. 340 407 IPR025605 -
Gma04g01950 407 Pfam OST-HTH Associated domain 272 319 IPR025677 -
Gma04g01950 407 MobiDBLite consensus disorder prediction 212 228 - -
Gma04g01950 407 Pfam NYN domain 61 128 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01950 Gma-Chr4 49970335 49972665 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01950 47 151 C2H2 Transcription Factor Family AT5G61190 38.182 3.44e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01950 - - gsj:114410891 783.867