Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01949 ATGACAATAATTAATGGTGATAGTAACCATAACAATAATAATTATAATAATTATGATGGGAGTGTAAGAAGAAGACACTACAGAGGAGTGAGGCAGCGTCCATGGGGAAAGTGGGCTGCAGAGATTCGCGATCCAAAGAAAGCAGCGAGGGTATGGCTTGGAACATTCGAAACTGCTGAAGCTGCAGCTCTTGCTTATGATGAAGCTGCTCTCAGATTCAAAGGAAGCAAGCAAAGCTCAATTTCCCTGAAAGGGTTCAAGGCACAGCTAGCGAATTTGCAACAATTCGTGAGTGGTGGGAGTAACAGCTTCAGTAACCAAGATATGCTTCGGTTCTATGGGGGAGACAACATGTTTGTTTCTTCTCAGCAGTCTGCATCTTCGTCTTCTTCTACTGCACTGTCTCAGCAGCAGCAAGAAGAGTTGCTGAAATTTTCGATGCAATTTGGAGGTTCTTCTCATTCTAATCATTCTGGGAATTGGAGGGGTGGACATTGA 498 0.4357 MTIINGDSNHNNNNYNNYDGSVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAALAYDEAALRFKGSKQSSISLKGFKAQLANLQQFVSGGSNSFSNQDMLRFYGGDNMFVSSQQSASSSSSTALSQQQQEELLKFSMQFGGSSHSNHSGNWRGGH 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01949 165 SUPERFAMILY DNA-binding domain 26 77 IPR016177 GO:0003677
Gma04g01949 165 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 87 151 - -
Gma04g01949 165 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 77 - -
Gma04g01949 165 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Gma04g01949 165 SMART rav1_2 26 93 IPR001471 GO:0003700|GO:0006355
Gma04g01949 165 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Gma04g01949 165 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Gma04g01949 165 CDD AP2 26 58 IPR001471 GO:0003700|GO:0006355
Gma04g01949 165 PANTHER DNA-BINDING DOMAIN 87 151 IPR044808 GO:0003700|GO:0009873
Gma04g01949 165 PANTHER DNA-BINDING DOMAIN 4 77 IPR044808 GO:0003700|GO:0009873
Gma04g01949 165 ProSiteProfiles AP2/ERF domain profile. 26 84 IPR001471 GO:0003700|GO:0006355
Gma04g01949 165 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01949 Gma-Chr4 49965077 49967582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01949 20 103 AP2-EREBP Transcription Factor Family AT5G61890 73.810 1.02e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma04g01949 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01949 - - gmx:100798671 157.532
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01949 04 49965077 49967582 Gma06g01456 06 13872923 13875526 GST