Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01945 ATGCCTTCTGAAATAATGGAGAAGAGGGGTGTTTCTGCCTCATCTCGCTTTTTGGATGACATTTCCTATGTTTCTGAGAAGAATACAGGATTACGGAAGCCAAAATTTATTCATGACCATTTTCTACAAGGGAAGAGTGAAATGGCTGCATCACCTGGCATCATTTTTAATACTTCGTCACCCCATGAAACCAATGCAAAAACAGGCTTGTTAATGTCTCAAACTACTCTATCTCGTGAAATTACAGAAGACCTACATTTTGGCAGAGAAGCAGGCAATATAGAGATGCTGAAGGATTCTACCACAGAATCATTGAATTATCACAAGAGATCATGGTCTAATGTGCATCGGCAGCCAGCATCTAGCTCATATGGTTTAGTTGGGAGCAAGATTGTCACCAATGCTGCCTCACGGGAAAGCAGTCTATTTTCAAGCTCACTGTCTGACATGTTTAGCCAAAAGTTGAGGTTATTGGGGAATGGAGTGCTGTCTGGTCAACCCATTACTGTTGGTTCCCTTCCTGAGGAAGAACCATATAAATCTCTCGAAGAAATTGAGGCTGAAACTATTGGAAATCTCCTTCCTGATGAAGATGACCTGTTTTCTGGAGTCAATGATGAGTTAGGATGCAGTACTCGCACTAGAATGAATGATGATTTTGAAGATTTTGACTTGTTCAGCAGCAGTGGAGGCATGGAATTGGAAGGAGATGAACATCTAATTTCTGGAAAAAGAACCAGTTGCGGGGATGAAGATCCTGATTACTTTGGAGTTTCTAAAGGAAAAATTCCTTTTGGTGAACAATCTTCTAGAACACTTTTTGTTAGAAACATCAATAGCAATGTAGAAGATTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCATATATACTGCCTGCAAGCATCGTGGATTTGTTATGATTTCTTATTATGATATAAGGGCAGCACAAAATGCAATGAAAGCACTTCAAAATAGGTCATTGAGATCTAGGAAACTTGATATACATTATTCAATTCCAAAGGGCAATTCTCCAGAGAAGGATATTGGCCATGGTACACTGATGATATCCAATCTTGATTCATCTGTTTTGGATGATGAACTAAAACAGATTTTTGGGTTTTATGGAGAAATTAGAGAAATCTATGAATATCCACAATTGAATCATGTCAAATTTATTGAATTTTATGATGTCCGGGCTGCAGAAGCTTCTCTTCGTGCATTAAACGGGATCTGCTTTGCTGGGAAGCACATTAAGCTTGAGCCTGGTCTTCCCAAGATTGCAACATGTATGATGCATCAGTCACACAAAGGAAAAGATGAACCTGATGTTGGTCATAGTCTGAGTGACAACATATCCTTAAGACATAAAGCAGGAGTGTCATCTGGATTTATTGCATCTGGTAGCGGCTTGGAAAATGGATATAATCAGGGATTTCATTCTGCGACACAGCTACCTGCTTTTATTGATAACTCACCGTTTCATGTGAATTCTAGCATTCACAAGATCACAAGAGGGGCATCTGCGGGAAAAGTATCTGGTGTTTTTGAGGCCAGTAATGCTTTTGATGCTATGAAATTTGCATCCATTTCGAGGTTCCATCCTCATTCTTTACCTGAATATCGTGAAAGTTTAGCTACTGGCAGTCCTTACAACTTTTCAAGTACCATTAACACGGCTTCCAATATTGGAACTGGATCGACGGAATCATCTGAAAGCAGGCACATTCAGGGAATGAGTTCAACTGGGAACCTAGCTGAGTTTAATGCAGGAGGAAACGGAAACCACCCCCATCATGGACTTTATCATATGTGGAATGGGTCCAACTTGCATCAGCAACCTTCTTCAAATGCCATGCTTTGGCAAAAAACACCATCCTTTGTTAATGGTGCATGTTCTCCAGGTCTTCCACAGATACCCAGCTTTCCTAGAACACCACCTCATGTTCTTAGAGCATCACATATAGACCACCAAGTGGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGATAGACAACATTCTTTCTTGGGAGAGTCACCTGATGCTTCTGGTTTTAGATTGGGTTCTGTTGGAAGTCCAGGCTTTAATGGTAGCTGGCAGTTGCATCCTCCTGCTTCTCACAATATGTTTCCTCATGTTGGTGGGAATGGTACAGAATTGACGTCAAATGCTGGGCAGGGCTCTCCTAAGCAGTTGTCACATGTTTTCCCTGGGAAACTTCCCATGACTTTGGTTTCTAAATTTGATACTACCAATGAACGAATGAGAAACCTCTATTCTCGTAGAAGTGAACCAAACACTAACAACAATGCTGATAAAAAACAATATGAACTTGACCTAGGCCGCATTTTACGTGGGGATGACAACCGGACAACACTCATGATAAAAAATATTCCCAATAAGTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGGCAAGTATTTATTTGGACTTGCTAAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAGGCTTTTCATGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCAGTACTCGCCTATGCCCGAATTCAAGGAAAATCTGCTCTTATTGCTCATTTCCAGAATTCAAGCCTGATGAATGAAGATAAACGGTGCCGTCCTATTCTCTTCCATACAGATGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCCTTGGGTAACAATATTAGAGTGAGGCCTGGAAAAATTCGCATTAATGGTAATGAGGAGAATCGCAGCCAAGGGAATCCTTCATCTTTGGCAAGTGGAGAAGAGTCCGGGAATGCAATAGAATCTACATCGAGCTCTTCAAAAAATTCTGACTGA 2940 0.4082 MPSEIMEKRGVSASSRFLDDISYVSEKNTGLRKPKFIHDHFLQGKSEMAASPGIIFNTSSPHETNAKTGLLMSQTTLSREITEDLHFGREAGNIEMLKDSTTESLNYHKRSWSNVHRQPASSSYGLVGSKIVTNAASRESSLFSSSLSDMFSQKLRLLGNGVLSGQPITVGSLPEEEPYKSLEEIEAETIGNLLPDEDDLFSGVNDELGCSTRTRMNDDFEDFDLFSSSGGMELEGDEHLISGKRTSCGDEDPDYFGVSKGKIPFGEQSSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDIRAAQNAMKALQNRSLRSRKLDIHYSIPKGNSPEKDIGHGTLMISNLDSSVLDDELKQIFGFYGEIREIYEYPQLNHVKFIEFYDVRAAEASLRALNGICFAGKHIKLEPGLPKIATCMMHQSHKGKDEPDVGHSLSDNISLRHKAGVSSGFIASGSGLENGYNQGFHSATQLPAFIDNSPFHVNSSIHKITRGASAGKVSGVFEASNAFDAMKFASISRFHPHSLPEYRESLATGSPYNFSSTINTASNIGTGSTESSESRHIQGMSSTGNLAEFNAGGNGNHPHHGLYHMWNGSNLHQQPSSNAMLWQKTPSFVNGACSPGLPQIPSFPRTPPHVLRASHIDHQVGSAPVVTASPWDRQHSFLGESPDASGFRLGSVGSPGFNGSWQLHPPASHNMFPHVGGNGTELTSNAGQGSPKQLSHVFPGKLPMTLVSKFDTTNERMRNLYSRRSEPNTNNNADKKQYELDLGRILRGDDNRTTLMIKNIPNKYTSKMLLVAIDEQCRGTYDFLYLPIDFKASIYLDLLNKCNVGYAFINMIDPGQIIPFHKAFHGKKWEKFNSEKVAVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRVRPGKIRINGNEENRSQGNPSSLASGEESGNAIESTSSSSKNSD 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01945 979 Pfam RNA recognition motif 2 795 899 IPR007201 -
Gma04g01945 979 Gene3D - 354 448 IPR012677 -
Gma04g01945 979 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 337 IPR000504 GO:0003723
Gma04g01945 979 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 358 423 IPR000504 GO:0003723
Gma04g01945 979 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 979 - -
Gma04g01945 979 MobiDBLite consensus disorder prediction 914 979 - -
Gma04g01945 979 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 356 429 IPR000504 GO:0003723
Gma04g01945 979 SUPERFAMILY RNA-binding domain, RBD 797 890 IPR035979 GO:0003676
Gma04g01945 979 CDD RRM3_MEI2_like 798 891 IPR034454 -
Gma04g01945 979 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 979 - -
Gma04g01945 979 CDD RRM1_MEI2_like 270 345 IPR034453 -
Gma04g01945 979 SMART rrm1_1 272 340 IPR000504 GO:0003723
Gma04g01945 979 SMART rrm1_1 357 425 IPR000504 GO:0003723
Gma04g01945 979 MobiDBLite consensus disorder prediction 945 979 - -
Gma04g01945 979 Gene3D - 265 353 IPR012677 -
Gma04g01945 979 SUPERFAMILY RNA-binding domain, RBD 268 428 IPR035979 GO:0003676
Gma04g01945 979 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 344 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01945 Gma-Chr4 49899752 49906536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01945 266 422 Eukaryotic Initiation Factors Gene Family AT3G16380 26.404 4.38e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01945 - - gmx:100797616 1936.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01945 04 49899752 49906536 Gma06g01459 06 13928166 13934968 GST
Gma08g00071 08 597131 604940 Gma04g01945 04 49899752 49906536 PCT
Gma04g01945 04 49899752 49906536 Gma08g00071 08 597131 604940 PCT