Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01942 ATGAATTTCTCAAAACTCAACGACTCGCCCATGTTCCGGCaacagCTCCAGTGCATGGAAGAGAGTTCAGAATCGTTACGCTCGAGATGTTTCAAGTTCTACAAAGGATGTCGAAAGTACACGGAAGGGCTTGGAGAGGCATATGATGGAGACATTGCATTTGCAAGTGCCCTTGAAAATTTTGGAGGAGGGCATAATGATCCTCTATTTGTAACTTTGGGAGGACCTGTCATGACCAAATTTTCTATTGCTTTGAGAGAAATCAGTACATACAAGGAACTTCTTCGGTCCCAGGCAGAGCATATGCTGAATGACCGGTTACTAAACATGCTAAACGTCGATATCCTAGATGTCAAGGAAGCTAGAAGGCGTTTTGAGAAAGCTTCCCTTGTACATGATCAGGCACGTGAGAAGTTTATGTCATTGAGAAAAAGCACTAGGATGGATATTGCCACTATCGTAGAAGAGGATTTGCACAATGCAAGATCCTCATTTGAGGAAGCTCGTTTCAATCTGGTTAGTGCTCTTCATAATGTTGAGGCCAAGAAGAGATTTGATTTTTTGGAGGCTGTCACTGGAGTTATGGATGCTCATCTTCGGTATTATCGACAGGGATATCAGCTATTACAAGAGATGGAGCCTTTCATTATCGAGGTATTGGCTTATACACAAAAAGCAAGAGAAAGTTACAATGAGGAGCAAATTAGTCTTTGTGAAAGAATGTTGGAGTACAAAAAACATGTTCATCATGAAAGTATGTTGTCCTTGAATGGTCCTTATGGTTCTCCTTGTAGAGATGGTCCAGTGCATCCTTTTTCTAGGATATCAGATAAAGTGGCAGATGCTGTAACAGAATCTGCTGAAAATGGAAAGGTTCAAATCATTCGACAAGGATATCTTTCAAAACGGTCCTCAAATTTGAGGGGTGACTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGCGGAATGCTTTACTACTTTCGTAAACCATGGAGTGGATTAAACAGTGGCAATCAATCATCTTTACACAGAAACTGTGCCACTGAAAATAGTGctggaattttgagtcgcctcctttcttcacattaccatggacttatccctgatgaaaaatctgtagcacgtcatacagtgaacctgctcacatcaacaatcaagattgatgctgaacagtcagatttaaggttctgcttcaggattatttcaccatcaaagagttatacattgcagGCAGAAAATGCCCTGGACCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCACCTTATTGAGTGCACAAACACTGTCAGATGACTCAGAAAGCGGTGACAGCTACTCTGCCAACAAGACTTATTTGTTAAAAGGTTCTCCAGATGATGATCATGCAGTGAGTGGGGATTCTATAAAAAATGAAAAGCCAATTGATATTCTTAGAAAGGTTAGCGGGAATGACAAATGTGCTGATTGTGGTAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACCCTTGATGTAAAAGTATGGGATTCTGCAGTGTTAACCATGTTTCAGTGCTTGGGGAATCTCTTTGCAAACTCAGTTTGGGAGGAACTGTTGCATTCGACAAGTACATCACAGACTGATGACACTCCTGATGGTTCATCCAAGACACACAAAAAGTTATTTCATGCAAGAAAACCAGCACATGATGATGCTATTTCACTAAAGGAGAGGTTCATTCATGCAAAGTATGCAGCAAAAGTCTTTGTTCGCCGGATAACAAATAACAACCGTCTCCTTTCAACGGCACAGCAGGTGGTGGAAAGCATCAGTGCCAATGACAAGAAAGCAGTGTACAGGCACATTGTGAAGTCAGAAGTGAATCTCAATGCTATTATTAGTGGGAAAGCAGGCTTTTCTTCCAACACGCCTTCTTCAATTAATCCAAACATATCATGTGAAAGTAAGACTCCACAAGTAGAGGATATACAAGATGGTTCTAGTGTGCTTCACCTGGCATGCATAATTAGTGATTCTGCAATGGTAGAGCTGCTCCTACAGTATGGTGCAGACATAAATGCTATTGATTCTAGAGGGAGGACACCTCTACATTACAGCACTATGAGAGGGAAGAATGCAACTGCAAGAGTGCTTATTACAAGGGGGGCCAATCCACTTGCCGTAGACAAAGAAGGCAACACTCCTTTTAAGCCTGCAACGGAACCTGACACTGCAGGCAAAGAAACTCTTGCTCTAAACCAGCAAATCGCATGCCCTCAAAACTTAATAGAAAAATGA 2358 0.3834 MNFSKLNDSPMFRQQLQCMEESSESLRSRCFKFYKGCRKYTEGLGEAYDGDIAFASALENFGGGHNDPLFVTLGGPVMTKFSIALREISTYKELLRSQAEHMLNDRLLNMLNVDILDVKEARRRFEKASLVHDQAREKFMSLRKSTRMDIATIVEEDLHNARSSFEEARFNLVSALHNVEAKKRFDFLEAVTGVMDAHLRYYRQGYQLLQEMEPFIIEVLAYTQKARESYNEEQISLCERMLEYKKHVHHESMLSLNGPYGSPCRDGPVHPFSRISDKVADAVTESAENGKVQIIRQGYLSKRSSNLRGDWKRRYFVLDSRGMLYYFRKPWSGLNSGNQSSLHRNCATENSAGILSRLLSSHYHGLIPDEKSVARHTVNLLTSTIKIDAEQSDLRFCFRIISPSKSYTLQAENALDQMDWMEKITGVIATLLSAQTLSDDSESGDSYSANKTYLLKGSPDDDHAVSGDSIKNEKPIDILRKVSGNDKCADCGKPDPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDSAVLTMFQCLGNLFANSVWEELLHSTSTSQTDDTPDGSSKTHKKLFHARKPAHDDAISLKERFIHAKYAAKVFVRRITNNNRLLSTAQQVVESISANDKKAVYRHIVKSEVNLNAIISGKAGFSSNTPSSINPNISCESKTPQVEDIQDGSSVLHLACIISDSAMVELLLQYGADINAIDSRGRTPLHYSTMRGKNATARVLITRGANPLAVDKEGNTPFKPATEPDTAGKETLALNQQIACPQNLIEK 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01942 785 SUPERFAMILY ArfGap/RecO-like zinc finger 472 612 IPR037278 -
Gma04g01942 785 CDD BAR_SFC_plant 15 215 IPR035670 -
Gma04g01942 785 Pfam PH domain 295 428 IPR001849 -
Gma04g01942 785 Gene3D Arf GTPase activating protein 459 617 IPR038508 -
Gma04g01942 785 SMART arf_gap_3 473 617 IPR001164 GO:0005096
Gma04g01942 785 Pfam Ankyrin repeats (many copies) 687 732 IPR002110 GO:0005515
Gma04g01942 785 SUPERFAMILY PH domain-like 294 443 - -
Gma04g01942 785 Gene3D - 668 774 IPR036770 -
Gma04g01942 785 PRINTS HIV Rev interacting protein signature 527 548 IPR001164 GO:0005096
Gma04g01942 785 PRINTS HIV Rev interacting protein signature 485 504 IPR001164 GO:0005096
Gma04g01942 785 PRINTS HIV Rev interacting protein signature 504 521 IPR001164 GO:0005096
Gma04g01942 785 ProSiteProfiles Ankyrin repeat region circular profile. 685 716 - -
Gma04g01942 785 Gene3D - 285 445 IPR011993 -
Gma04g01942 785 PANTHER CENTAURIN/ARF 1 775 IPR045258 GO:0005096
Gma04g01942 785 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Gma04g01942 785 SMART 5bar 2 218 IPR004148 GO:0005515|GO:0005737
Gma04g01942 785 Coils Coil 118 138 - -
Gma04g01942 785 Pfam BAR domain of APPL family 6 233 - -
Gma04g01942 785 ProSiteProfiles ARF GTPase-activating proteins domain profile. 473 617 IPR001164 GO:0005096
Gma04g01942 785 SMART PH_update 294 431 IPR001849 -
Gma04g01942 785 ProSiteProfiles Ankyrin repeat region circular profile. 718 744 - -
Gma04g01942 785 CDD ArfGap 476 604 - -
Gma04g01942 785 SUPERFAMILY BAR/IMD domain-like 6 316 IPR027267 -
Gma04g01942 785 ProSiteProfiles Ankyrin repeat profile. 718 750 IPR002110 GO:0005515
Gma04g01942 785 MobiDBLite consensus disorder prediction 562 581 - -
Gma04g01942 785 SUPERFAMILY Ankyrin repeat 684 760 IPR036770 -
Gma04g01942 785 ProSiteProfiles Ankyrin repeat profile. 685 717 IPR002110 GO:0005515
Gma04g01942 785 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 775 - -
Gma04g01942 785 CDD PH_ACAP 296 433 - -
Gma04g01942 785 ProSiteProfiles PH domain profile. 293 429 IPR001849 -
Gma04g01942 785 SMART ANK_2a 685 714 IPR002110 GO:0005515
Gma04g01942 785 SMART ANK_2a 718 747 IPR002110 GO:0005515
Gma04g01942 785 Pfam Putative GTPase activating protein for Arf 476 610 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01942 Gma-Chr4 49847314 49854982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01942 477 615 C2H2 Transcription Factor Family AT4G21160 42.657 8.47e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01942 K12489 - gmx:100797073 1540.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01464 06 13982752 13990299 Gma04g01942 04 49847314 49854982 ECH
Gma04g01942 04 49847314 49854982 Gma04g01942 04 49847314 49854982 ECH
Gma04g01942 04 49847314 49854982 Gma06g01464 06 13982752 13990299 GST
Gma05g01972 05 41040378 41054295 Gma04g01942 04 49847314 49854982 PCT
Gma04g01942 04 49847314 49854982 Gma05g01972 05 41040378 41054295 PCT