Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01940 ATGACATCATTGGAGGTGACGATGAAGGGAAATTGCTTGAACCACAACGACGGCGGAGCCACGGAGCCTCATTCCCCGTCCACGGCCAAAGACGCAGAAGCTGCACTTTTCAGGGAGCTATGGCATGCTTGTGCAGGTCCTCTAGTCACGGTTCCGCGAGAAAGAGAGCGCGTGTTTTATTTCCCTCAGGGACATATTGAGCAGGTGGAGGCGTCGACGAACCAGGTGGCGGACCAGCACATGCCGGTTTACGATCTCCCACCCAAGATCCTTTGTCGGGTCATCAACGTGCAGCTGAAGGCCGAGCCCGACACGGATGAGGTGTTTGCTCAGGTGACTTTGCTTCCGGAGCCAAATCAAGATGAGAATGCCGTGGAGAAGGAGCCACCACCGCCTCCTCCGCCGCGGTTTCATGTTCATTCTTTCTGTAAAACTCTGACGGCGTCCGATACCAGTACCCATGGTGGGTTTTCTGTGCTGAGACGGCATGCTGATGAATGTCTTCCTCCTCTGGATATGTCGAAGCAGCCACCCACACAGGAATTGGTGGCTAAGGATCTTCATGCAAATGAATGGCGATTTAAACATATCTTCCGAGgtcaaccccgtagacacttgcttcagagtggttggagtgtttttgtcagctccaaaaggcttgtcgctggggatgcatttatatttcttagaggtgagaatggggaacttcgtgttggtgtccgacgagcaatgagacagcagggtaatgttccatcctcagttatctccagccACAGCATGCATCTCGGTGTCCTTGCAACTGCTTGGCATGCCATCTCGACCGGGACCATCTTCACTGTTTATTACAAGCCTAGGACCAGTCCTGCTGAATTTATTGTTCCGTATGATCAATATATGGAGTCTCTCAAAAATAATTATAGCATCGGGATGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCAGAGCAGAGGTTTACTGGTACCATTGTTGGAATAGAAGATTCTGATCCCAAAAGGTGGAGAGATTCCAAATGGAGATGCCTCAAGGTTGTGAGATGGGATGAAACATCCAACACCCCTCGGCCAGAGAGAGTTTCCCCTTGGAAAATAGAGCCTGCTCTTGCTCCCCCGGCTCTAAATCCTCTTTCAATGCCCAGGCCTAAAAGGCCTCGGTCTAATGCAGTTCCTTCATCCCCAGATTCTTCTGTTCTTACTCGAGAAGCATCATCTAAAGTGAGCATAGACCCTTCACCGGCAAATGGCTTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTGCTGAAAGTAATGAGTCTGATACTGCTGAGAAGTCTGTTGTTTGGCCACCTGCTGCAGTAGATGATGAAAAGATGGATGTTTCTACTTCAAGGAGGTATGGTTCAGAGAGCTGGATGTCAATGGGGAGGAATGAGCCTACATATTCGGATCTTCTTTCAGGCTTTGGGGCCAGTGGGGATCCTTCTCATTTATCCTTGAAGGATCAAATGAGCCCTGCTTATTCTGCTAGAAAGCAATCATTGGATCATGAAGGCAAACTTCACATGCCTCATCCATGGCCTGTAATGCCCTCTAGTCTGTCACTGAGCATCTTGGACTCTAATACAAAAGGTCCTGCACATGGTGGTGATACAACTTACAAAGCTCGAGGGAATTTGAGGTACAGTGCATTTGGTGAATACCCTGCACTCCATGGTCATAAAGTTGAGCATTCACATGGAAACTTGATGCCACCCCCACCTGCACTCCTAACTCAATATCAGAGTCCTTGTTCAAGAGAGCTTATGTCAAAACAAGTGTCAGCAAAAACTTGTGAGGCTGTGAAACCAAAAGATGGTGACTGTAAGCTATTTGGCTTCTCACTTATCAGTGGCCCTACTTTACCAGAGCCTTCTTTATCACAAAGAAATGTGAGTGAGGCTGCTGATCAGATGCATCTTACAGCACACCAACAAAGAACATCTGAAAATGATGAAAAGTTAGACCACTCGAAGGGATCAAGACCTGTAGATGATATAGTTGTTGATGACCAGGACAGACCATTACGGACTTCTCAGCTGCATACTAAAGATGTTCAAGCTAAACCTCTCAGTGGTTCTGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGCATTGCACTTGGTAGATCAGTGGACCTTACAAAGTACAGTGGCTATGATGAATTAGTTGCTGAATTGGATCAGCTGTTTGAATTTGGGGGTGAATTATTGTCAACTAAAAAAGATTGGCTTATCGTCTTTACTGATAATGAGGGTGATATGATGCTTGTAGGCGATGATCCATGGCAGGAATTCTGTGCCATGGTTCGCAAAATTTATATCTACCCTAAAGAGGAGATCCAGAAAATGAGCCCAGGTACCTTGAGCTCGAAAAATGAAGAGAATCATTCGGTGACGGCTAGTGAAGCTCTCAGATTCCGGGATGGAAAGTAG 2490 0.4365 MTSLEVTMKGNCLNHNDGGATEPHSPSTAKDAEAALFRELWHACAGPLVTVPRERERVFYFPQGHIEQVEASTNQVADQHMPVYDLPPKILCRVINVQLKAEPDTDEVFAQVTLLPEPNQDENAVEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHANEWRFKHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDPKRWRDSKWRCLKVVRWDETSNTPRPERVSPWKIEPALAPPALNPLSMPRPKRPRSNAVPSSPDSSVLTREASSKVSIDPSPANGFPRVLQGQEFSTLRGNFAESNESDTAEKSVVWPPAAVDDEKMDVSTSRRYGSESWMSMGRNEPTYSDLLSGFGASGDPSHLSLKDQMSPAYSARKQSLDHEGKLHMPHPWPVMPSSLSLSILDSNTKGPAHGGDTTYKARGNLRYSAFGEYPALHGHKVEHSHGNLMPPPPALLTQYQSPCSRELMSKQVSAKTCEAVKPKDGDCKLFGFSLISGPTLPEPSLSQRNVSEAADQMHLTAHQQRTSENDEKLDHSKGSRPVDDIVVDDQDRPLRTSQLHTKDVQAKPLSGSARSCTKVHKKGIALGRSVDLTKYSGYDELVAELDQLFEFGGELLSTKKDWLIVFTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSKNEENHSVTASEALRFRDGK 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01940 829 SMART B3_2 142 244 IPR003340 GO:0003677
Gma04g01940 829 Pfam AUX/IAA family 704 801 IPR033389 -
Gma04g01940 829 Pfam B3 DNA binding domain 142 243 IPR003340 GO:0003677
Gma04g01940 829 Gene3D - 710 803 - -
Gma04g01940 829 SUPERFAMILY CAD & PB1 domains 717 791 - -
Gma04g01940 829 Gene3D - 305 376 - -
Gma04g01940 829 MobiDBLite consensus disorder prediction 803 829 - -
Gma04g01940 829 ProSiteProfiles B3 DNA-binding domain profile. 142 244 IPR003340 GO:0003677
Gma04g01940 829 MobiDBLite consensus disorder prediction 664 690 - -
Gma04g01940 829 MobiDBLite consensus disorder prediction 395 417 - -
Gma04g01940 829 SUPERFAMILY DNA-binding pseudobarrel domain 138 271 IPR015300 -
Gma04g01940 829 MobiDBLite consensus disorder prediction 658 690 - -
Gma04g01940 829 ProSiteProfiles PB1 domain profile. 714 796 IPR000270 GO:0005515
Gma04g01940 829 MobiDBLite consensus disorder prediction 377 424 - -
Gma04g01940 829 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 819 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma04g01940 829 Pfam Auxin response factor 268 350 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma04g01940 829 Gene3D - 139 244 IPR015300 -
Gma04g01940 829 CDD B3_DNA 140 242 IPR003340 GO:0003677
Gma04g01940 829 PANTHER AUXIN RESPONSE FACTOR 2 16 819 - -
Gma04g01940 829 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01940 Gma-Chr4 49809549 49814099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01940 1 817 B3 DNA Binding Superfamily AT5G62000 65.023 0.0 1070
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma04g01940 B3 2.1e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01940 - - gmx:100797082 1661.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01940 04 49809549 49814099 Gma06g01466 06 14019250 14024198 GST
Gma05g01973 05 41074783 41080023 Gma04g01940 04 49809549 49814099 PCT
Gma08g00076 08 661000 666526 Gma04g01940 04 49809549 49814099 PCT
Gma04g01940 04 49809549 49814099 Gma17g01204 17 10587387 10589612 PCT
Gma04g01940 04 49809549 49814099 Gma05g00449 05 4276168 4278816 PCT