Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01939 ATGATGTCGAGAATAAACAACAGCCTTGTCTGGATGGACGAACGAGAAGCCGAAAACACTGCCTCCGCTTCCTGGGCCAGAAACTCCAAGCCTAACAACAACATCATCATTGCCACCGGCACAACCACAACCACAGGTTTCGTCGAAACCTCTAACGACTTAGGTTCTCTCTGCGCCTTCAAGCCCATGCTCGATGTTGACGACGAATGGTACAACAACATCACCAACCACCACCACCACCAAGATATTGCCTTCGACCCCGACAACCTCTTACTCCACCCCTCCGCCGTGGACTCCTCCTCCTCCTGCTCCCCCTCTCACCTCCAGTTCTTCCTCCCTCCCAACCCCAAACTCAACCCCTTCGATATGGGCTTTCTTGACCCTCAAGCTTCTTCTTCCTTACCCCTTCTCGCCTCCGAAACAACACACTTCACACCCCCTCAGACCAGCACCACCACCGCTTTCGCCGGCTTCCAGAGCCTCCAAGAGGGTTCCTCCAATCCTCTCTTTCTCAACCGTTCCAACATTCTGAGACCTCTCGAGTCGCTGCCCCCCTCCGGGGCCCAACCCACCCTTTTCCAGAAGAGAGCCGCGCTCAGGAAGAACATGAACATGAGTGACAATAAGAAGAGGAAGGAGAAGGATGAGGTGGTGGTTGAGGATGTGAGTTTCGACGGGTCTGGCTTGAACTACGATTCTGATGACTTAACTGAGAGTAATTATAATGACGCTAAGGAGAAGAATGGTGGTGGGGTTAGTTCCAATGCCAACAGCACCGTCACCGGTTTGGATCAGAAAGGGAAGAAGAAGGGAATGCCTGCTAAGAATTTGATGGCCGAACGACGCCGCCGGAAGAAGCTCAATGACAGACTCTACATGCTGAGGTCCGTTGTTCCCAAGATTAGCAAAATGGACAGGGCTTCAATTCTTGGGGATGCAATTGAGTATCTGAAGGAGCTTCTGCAAAGGATCAATGATCTGCATAACGAATTGGAGTCGACGCCGGTGGGTTCTTCGCTCACTCCAGTCTCAAGTTTCCATCCTTTGACGCCTACTCCTCCTACGCTGCCGTGCCGAATCAAGGAAGAACTGTGCCCCAGCTCATTGCCAAGCCCCAATGGCCAACCTGCTAGGGTTGAGGTTCGGCTGCGGGAAGGAAGGGCAGTTAACATCCACATGTTTTGTGGCCGCAAACCTGGTCTGTTGCTCTCAACCATGAGGGCTATGGATAACCTTGGATTAGACATTCAGCAGGCTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGCAATGCAAAGAAGGTCAGGATGTGCATCCGGAGCAAATCAAAGCAGTACTCTTAGATTCAGCTGGCTACAATGGCATGATGTAA 1389 0.5162 MMSRINNSLVWMDEREAENTASASWARNSKPNNNIIIATGTTTTTGFVETSNDLGSLCAFKPMLDVDDEWYNNITNHHHHQDIAFDPDNLLLHPSAVDSSSSCSPSHLQFFLPPNPKLNPFDMGFLDPQASSSLPLLASETTHFTPPQTSTTTAFAGFQSLQEGSSNPLFLNRSNILRPLESLPPSGAQPTLFQKRAALRKNMNMSDNKKRKEKDEVVVEDVSFDGSGLNYDSDDLTESNYNDAKEKNGGGVSSNANSTVTGLDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPVGSSLTPVSSFHPLTPTPPTLPCRIKEELCPSSLPSPNGQPARVEVRLREGRAVNIHMFCGRKPGLLLSTMRAMDNLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDVHPEQIKAVLLDSAGYNGMM 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01939 462 SMART finulus 277 326 IPR011598 GO:0046983
Gma04g01939 462 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 126 462 - -
Gma04g01939 462 MobiDBLite consensus disorder prediction 230 264 - -
Gma04g01939 462 CDD ACT_UUR-ACR-like 391 451 - -
Gma04g01939 462 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 274 339 IPR036638 GO:0046983
Gma04g01939 462 MobiDBLite consensus disorder prediction 229 272 - -
Gma04g01939 462 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 320 IPR011598 GO:0046983
Gma04g01939 462 PANTHER BHLH TRANSCRIPTIONAL FACTOR 126 462 - -
Gma04g01939 462 CDD bHLH_AtAMS_like 274 339 - -
Gma04g01939 462 Coils Coil 310 334 - -
Gma04g01939 462 Pfam Helix-loop-helix DNA-binding domain 278 320 IPR011598 GO:0046983
Gma04g01939 462 Gene3D - 265 334 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01939 Gma-Chr4 49804612 49808155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01939 60 435 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 50.897 1.11e-119 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma04g01939 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01939 - - gmx:100217332 824.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01939 04 49804612 49808155 Gma06g01467 06 14025083 14028576 GST
Gma05g01974 05 41080602 41084800 Gma04g01939 04 49804612 49808155 PCT
Gma08g00077 08 667108 669536 Gma04g01939 04 49804612 49808155 PCT
Gma04g01939 04 49804612 49808155 Gma05g01974 05 41080602 41084800 PCT
Gma04g01939 04 49804612 49808155 Gma08g00077 08 667108 669536 PCT