LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma04g01936	ATGAAGTGGCCAACATGGAAGTCCAAGTCCAACACCATGGCAATATCTGTGGTGTTTCTTCACCTGAGTTTCTCCATGGAGGTGTTCTGTCACCCTTCTCATGCAGACACAATTGCTGCGCTTCCTGGCCAACCCCACGTAGGCTTTCAACAGTTCTCAGGATATGTCACAGTTGATGACAAGAAACAAAAGTCTCTCTTTTACTATTTTGCTGAGGCAGAAACTGATCCAGCATCAAAGCCTCTTGTTCTGTGGCTCAATGGAGGACCTGGTTGTTCTTCTCTGGGAGTTGGAGCATTCTCAGAAAATGGACCCTTCAGACCAAATGGAGAATTTCTGATTAAAAATTATTATAGTTGGAATAAAGAGGCAAACATGCTGTATTTGGAGACACCAGTTGGAGTGGGGTTCTCTTATGCTAAAGGTAGCTCCTCCTATATGACTGTGAATGACGAGGCAACAGCCAGGGACAACCTTATATTCCTGCTACGCTGGTTCAACAAGTTCCCTCAATACAGGAGCAGAGACTTGTTTCTAACGGGGGAAAGCTATGCAGGTCATTATGTTCCTCAACTTGCAAAGCTCATAATTGAAATGAACACAAAGAACAAGATATTCAATCTGAAAGGCATTGCCTTGGGTAATCCAGTTCTAGAATATGCCACCGACTTCAATTCAAGGGCTGAGTTCTTCTGGTCTCATGGACTAATATCAGATTCAACCTACAACATGTTCACCACAGTGTGTAACTATTCTAGGTACGTGAGTGAGTACTATAGGGACTCGGTTTCGCCTCTTTGTTCAAAGGTAATGGGCCAAGTGAGCAGAGAAACCAGCAAATTTGTGGACAAATATGATGTCACACTTGATGTTTGCATTTCCTCCGTGCTATCACAATCCAAGGTTATTTGTCCTCAATCCCAAGAAGCAAATGAGAGCATAGATGTGTGTGTAGATGACAAGGTTACAAACTACTTAAACCGGAGAGATGTACAAGAGGCACTTCATGCAAAGCTCGTTGGCATTCGCAAGTGGGATGTTTGCAGCAACATACTGGACTATGATATGCTAAACCTGGAAGTGCCTACACTCCCTGTTGTTGGATCACTGATAAAAGCTGGAGTTAAGGTCCTAATTTATAGTGGAGATCAAGATTCTGTAATTCCACTGACTGGAAGCCGTACCTTAGTTCAGAAGTTGGCAAGACAATTAGGACTGAATTCAACAGTCCCTTACAGAGTATGGTTTGAAGGCCAACAGGTTGGTGGGTGGACTCAAGTATATGGCAATATCCTCTCGTTTGCCACTGTTAGAGGTGCCTCCCATGAAGCCCCTTTCTCACAACCTGAAAGATCACTTGTGCTATTCAAGTCATTCTTGGAAGGCAGGCCCTTACCTGACGCTTTCTGA	1410	0.4383	MKWPTWKSKSNTMAISVVFLHLSFSMEVFCHPSHADTIAALPGQPHVGFQQFSGYVTVDDKKQKSLFYYFAEAETDPASKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEFLIKNYYSWNKEANMLYLETPVGVGFSYAKGSSSYMTVNDEATARDNLIFLLRWFNKFPQYRSRDLFLTGESYAGHYVPQLAKLIIEMNTKNKIFNLKGIALGNPVLEYATDFNSRAEFFWSHGLISDSTYNMFTTVCNYSRYVSEYYRDSVSPLCSKVMGQVSRETSKFVDKYDVTLDVCISSVLSQSKVICPQSQEANESIDVCVDDKVTNYLNRRDVQEALHAKLVGIRKWDVCSNILDYDMLNLEVPTLPVVGSLIKAGVKVLIYSGDQDSVIPLTGSRTLVQKLARQLGLNSTVPYRVWFEGQQVGGWTQVYGNILSFATVRGASHEAPFSQPERSLVLFKSFLEGRPLPDAF	469

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma04g01936	469	SUPERFAMILY	alpha/beta-Hydrolases	40	466	IPR029058	-
	Gma04g01936	469	Gene3D	-	317	353	-	-
	Gma04g01936	469	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	30	467	IPR001563	GO:0004185\|GO:0006508
	Gma04g01936	469	Gene3D	-	363	462	-	-
	Gma04g01936	469	ProSitePatterns	Serine carboxypeptidases, histidine active site.	432	449	IPR033124	GO:0004185
	Gma04g01936	469	Gene3D	alpha/beta hydrolase	33	294	IPR029058	-
	Gma04g01936	469	Pfam	Serine carboxypeptidase	43	462	IPR001563	GO:0004185\|GO:0006508
	Gma04g01936	469	PANTHER	CARBOXYPEPTIDASE	30	467	-	-
	Gma04g01936	469	ProSitePatterns	Serine carboxypeptidases, serine active site.	179	186	IPR018202	GO:0004185
	Gma04g01936	469	PRINTS	Carboxypeptidase C serine protease (S10) family signature	116	128	IPR001563	GO:0004185\|GO:0006508
	Gma04g01936	469	PRINTS	Carboxypeptidase C serine protease (S10) family signature	129	139	IPR001563	GO:0004185\|GO:0006508
	Gma04g01936	469	PRINTS	Carboxypeptidase C serine protease (S10) family signature	165	190	IPR001563	GO:0004185\|GO:0006508
	Gma04g01936	469	PRINTS	Carboxypeptidase C serine protease (S10) family signature	432	445	IPR001563	GO:0004185\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma04g01936	Gma-Chr4	49763760	49767323	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma04g01936	325	465	Calmodulin-binding Proteins	AT2G22960	29.078	3.04e-16	75.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma04g01936	K16297		-	gmx:100795668	957.977