Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01910 ATGGTGCAGAAAGATGTTAAGGTCATGATGCAGCGAATCGAGGTGGAGGTTGGGGACAACGAGAAAACATGGACGATGCAGAGATCTAAGCGGCGAGGTTACAGTCATGGTCGGAGGAGGAGCACGCTCAGCCTCAGAGGAAGGCGGAGGATGCTAAGAAGGGACCGGCGCGGGTCTGTTTTGGCACAAATGACTTTCAGTGAGGTGGCTAACAGGCAACGAGTGCTCGGTGAAGGAAGAAGTGAGCATCATATATATTGCTGCTATTGTCTGCAAGTGCAAGCAACCTTACAACAACACAGAGGAGCAATGGAGGAGCAAAACCGATTTGGAGTTTATAGAATGAAAGGGGAGTTTTCTGTTGACTTGAAGCTTGGTCATCATGTGGGGAATTCTGGCACTGAATCAGCACTAGCCAACAAGTCCAAAGATGCTGCTGCTGCAGGAGTTTCCAAAATGGCATCCTCACCTTCAGGGTCTTCTAAGAGAGCTAGAGCCATAAACAGCACATCCCTCACAGTGGCATGCCTTGTGGATGGGTGCAATTCAGATCTTAGCAATTGTAGAGATTATCATAGGCGCCATAAGGTGTGTGAGCTCCATTCCAAGACCCCAGAGGTCACAATTGGTGGCTTCAAGCAAAGGTTCTGCCAACAATGTAGCAGGTTCCATTCGCTGGAGCAATTTGATGAAAGAAAAAGAAGCTGCAGAAAACGTTTAGATGGACACAATAGAAGGAGAAGAAAGCCCCAGCCAGAACCTCTCTCGAGACCTGGTAGTTTTTTGTCGAATTACCAAGGCACCCAATTGCTACCCTTCTCAAGCCCACACGTATATCCATCCACTGCCATAGTGAGCCCAGCTTGGAGTGCTTCACTTGTCACTTCCTCTGCAGATGCTAGGTTGCACAaccacaaccaacaacaacaccaccaccaccaacaaGACCTTTTTCTTGGATCTTCCCACAAAGAAGGGAAGCAAGTAGCATTCTTACACAACAACCATCCCTCCACAGCTGCAGCACTCAGCAGCCAAACCCCGCCACCTTTTCCATCCTCTTCCGTTCGCCACACCCTTCTCAGGACCGACCCTCTATCAGAAACTTGCGGCGGAGCTAGAAGCAAAATGTTCTGTGAAAGCTTAACAACAACAACAACTAACAATAATTCGGTGCATGACACTACTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACACCAGGGAATGGCTTGAACCAAATGGTGCAGCCTCCTCCCTCAATGTCCCTCATGCAGCCCTTAGGCCTGAGCTTGCAGGATAATAACAGCTTAGAGTCTGTGGATCATTGTTCCTCCATGTATAGCTTGGCTTCTGATCATGGATCCCAGTGCAATGAAGCAGCCCCTCAACTGTTTCCCTTTCAATGGGAATAG 1425 0.4751 MVQKDVKVMMQRIEVEVGDNEKTWTMQRSKRRGYSHGRRRSTLSLRGRRRMLRRDRRGSVLAQMTFSEVANRQRVLGEGRSEHHIYCCYCLQVQATLQQHRGAMEEQNRFGVYRMKGEFSVDLKLGHHVGNSGTESALANKSKDAAAAGVSKMASSPSGSSKRARAINSTSLTVACLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIGGFKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLSRPGSFLSNYQGTQLLPFSSPHVYPSTAIVSPAWSASLVTSSADARLHNHNQQQHHHHQQDLFLGSSHKEGKQVAFLHNNHPSTAAALSSQTPPPFPSSSVRHTLLRTDPLSETCGGARSKMFCESLTTTTTNNNSVHDTTPCALSLLSSSQTHTPGNGLNQMVQPPPSMSLMQPLGLSLQDNNSLESVDHCSSMYSLASDHGSQCNEAAPQLFPFQWE 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01910 474 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 103 474 IPR044817 GO:0003677
Gma04g01910 474 Gene3D - 167 237 IPR036893 GO:0003677|GO:0005634
Gma04g01910 474 MobiDBLite consensus disorder prediction 237 261 - -
Gma04g01910 474 ProSiteProfiles Zinc finger SBP-type profile. 173 250 IPR004333 GO:0003677
Gma04g01910 474 Pfam SBP domain 176 249 IPR004333 GO:0003677
Gma04g01910 474 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 103 474 - -
Gma04g01910 474 SUPERFAMILY SBT domain 174 255 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01910 Gma-Chr4 49364806 49376426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01910 111 474 SBP-box Gene Family AT5G50670 41.379 1.08e-71 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma04g01910 SBP 1.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01910 - - gmx:100787407 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01910 04 49364806 49376426 Gma06g01499 06 14455632 14460234 GST
Gma05g02000 05 41376760 41379554 Gma04g01910 04 49364806 49376426 PCT
Gma08g00108 08 946692 949230 Gma04g01910 04 49364806 49376426 PCT
Gma04g01910 04 49364806 49376426 Gma05g02000 05 41376760 41379554 PCT
Gma04g01910 04 49364806 49376426 Gma08g00108 08 946692 949230 PCT