Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01889 CTCTCTTCTCTCTTCTTCTTCTGTGTGTCTGTCGTTGAAGCCAAAACGAAACAACGAAGAAGAAGAAGAAGCATGGTTTCAACGAGACGCAACAGTGGGTCTTTCTCCAACAGTAACAAGAGGTCCTCTTCTTCTTCCGAAGACAAGACTCCTTCCCCTCCCCCTAAGCGCCAAAAGGTCGACAATGGTGCCGCCGCGTCGGAGAAACCGATGCCGGCGGCGGAAAATTCCAAGGAATTGGGCACGCCGGAGCCTCCCGCTGATTCCGTAGAATGCGCCGCTCAGGACGCCCAGATCTCCGGCGCCGCCAGTCCCGACGGCAAGGCCGAGGCCACTCCGCCGATCGCCGATGGTTCTACACCGACTGTGGTGGCTGATAAACCTAGGGGTTCGTTCTCTTCTTGGAGTGTACATCCGAAGCAAAACCCAAATTTCGAAGCTTCAGTTCCATGGTGCAGACTCTTGTCTCAGTCTGCGCAGAATCCGAATGTTTTAATTTGCACACCCAACTTTACTATTGGCTCAAGTAGGAGTTGCAATTTTGTGTTGAAGGATCAGACTATAAGTGCAAATTTGTGCAAGATCAAGCACACGCAGCGCGAGGGAAGTGTCGTGGCTGTGCTAGAAAGTATGGGTAGCAAAGGATCGGTGGTAGTGAATGGGACTCTCGTCAAGAAGAGTACCAGCTGCATGCTTAACTCTGGGGATGAGGTGGTTTTTGGTTTGCTGGGGAATCATTCTTATATTTTTCAGCAAATAAATCCTGAAGTTACAGTTAAGGCTGCAGAAATTCAGGGTGGCGTTGGCAAGTTTTTTCAGTTTGAGAGGAGGGCTGGAGACCTGGCTGGAGCTTCTATTTTGGCCTCTCTTTCTAGCCTCAGACCAGAGCTTACAAGATGGAAATCTCCATCTCAGACTGCCAGTAAACCTCAGCAGGGTACAGATGTGTCTAGTCATTCTGTTCTCCCTGATGGTACAGAAACTGAGCTCGATGGCCTGGAAGGCAACTCAGCTCCAAATGTAGCGACTGATAAAGCTTCTGATGTTGGAACAAGTGACAAGAATTCACCTATGGATTGCGATCCAGATGATGCAGGCACAGAGGCAGGCAATGTATTTGAAGAAAGAAATGGGACGAGGGATGCGCAAGCTGCATCAACTTCGGGTACTTCTGTACGCTGTGCGGTTTTTAAAGAAGATGTCCATGCTGCAATACTGGATGGGAAAGAAATAGAAGTGTCCTTAGACAACTTCCCGTACTACTTGAGTGAGAATACAAAAAATGTCCTAATTGCTGCTTGCGTTATACACCTGAAGCATAAAGAACTTGTGAAGTACACCACAGATCTTACAACCATAAACCCCCGTATTCTACTCTCAGGACCTGCAGGGTCAGAAATATATCAGGAGATGTTGGCAAAAGCACTTGCAAAATACTTTGGTGCTAAATTGCTCATATTTGATAGCCATTCGCTTTTGGGTGGTTTATCCTCCAAGGAAGCTGAGCTGCTCAAAGATGGATTTAGTGCTGACAAATCCTGTGGCTATGCTAAACAAAGTCCTACAGCCACAGACATGGCCAGGTGCATGGATCCATCAGCTAGTGAACCAGAAACGCCTAACTCCTCAAATGCACCTACTCCATATGGCTTTGAGTCTCAACCTAAGTTGGAAGCTGATAATGTACCATCTACCTCCGGGACAGCTAAAAATTGTGTGTTTAAACTAGGTGACAGGGTAAAATATAGTTCATCTTCTGGGGGCTTGTATCAGCTTCAGACTATTTCTTCAAGCAATCGCATATTCAGGGGTCCAGCTAATGGAAGTCGGGGGAAGGTTGTCTTACTTTTTGATGATAATCCCTTGTCAAAAATTGGCGTAAGATTTGATAAACCCATACCTGATGGAGTTGATCTTGGAGGTTTGTGTGAGCCTGGTCAAGGATTTTTCTGCAATGTGACTGATCTTCGATTAGAAAACAGTGGCATTGAAGAACTTGACAAATTACTTATTAATACATTGTTTGAGGTTGTGGTTAGTGAGAGCAGAGATGCACCTTTCATTTTGTTCATGAAAGATGCAGAGAAGTCTATAGTTGGAAATGGAGATCCATTTTCATTTAAAAGTAGGCTTGAAAATCTTCCGGACAATGTGGTCGTAATAGGTTCACACACTCACACTGACAGTCGAAAGGAGAAGTCACATCCTGGGGGTTTGCTTTTTACAAAGTTCGGAAGTAATCAGACTGCTCTTCTTGATTTGGCTTTCCCGgatagttttggaagattgcatgacaggggaaaggaggccccaaagccaaacaaaaccttaactaagcttttcccaaataaagtgacaattcacatgccacaggatgagacacttctagcatcttggaagcaacaactcgatcgagatgttgagactcttaaaattaaaggaaatttgcacaacttacgcacaGTTTTGAGCCGATGTGGGGTGGAATGTGAAGGACTAGAGACCTTGTGCATTAAGGATCAGACACTTAGTATTGAAAATGCAGAGAAGATAGTTGGTTGGGCTTTAAGCCGCCATCTCATGCAGAATGCTGAAACTGATCCTGATGCAAAGCTTGTGTTGTCTTGTGAGAGCATCCAGTATGGGATTGGGATCTTACATGCTATCCAGAATGAGTCGAAAAGCCTGAAGAAGTCTCTTAAGGATGTTGTAACAGAAAACGAGTTTGAAAAGAGGCTTTTGGCTGATGTTATTCCACCTAATGACATTGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTCAAGGATACTTTGAAGGAATTGGTTATGCTTCCTTTACAGAGGCCCGAGCTATTTTGCAAAGGGCAATTAACCAAGCCGTGCAAGGGTATCCTATTATTTGGTCCCCCTGGAACAGGTAAGACAATGCTTGCAAAGGCAGTTGCTACCGAAGCTGGTGCAAATTTCATCAACATTTCCATGTCAAGTATCACATCTAAGTGGTTTGGTGAGGGTGAAAAGTATGTCAAAGCTGTTTTTTCCCTGGCTAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAGTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAACTGGGATGGCTTACGCACAAAGGATACTGAGCGAGTTCTTGTGCTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATTCGGAGGCTGCCTCGGAGATTAATGGTAAATTTGCCCGATGCTCCAAATAGAGCAAAAATATTAAAAGTTATACTGGCAAAAGAGGACTTGTCTTCTGATATTAATATGGATGCAATTGCAAGTATGACTGATGGATATTCCGGAAGCGATCTAAAGAATTTGTGTGTAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAGAAAAAGGAACAGGCTGCTGCTGTATCAGAAGGTAGACCTGCTCCAGCATTAAGTGGAAGTGCAGATATCCGATCTTTAAACATGGAAGATTTCAAATATGCTCATCAACAGGTCTGTGCAAGTGTTTCTTCTGAATCCATAAATATGACCGAGCTTCAACAATGGAACGAACTATATGGTGAAGGTGGTTCAAGAGTTAAAAAAGCATTAAGCTATTTCATGTGA 3693 0.4208 LSSLFFFCVSVVEAKTKQRRRRRSMVSTRRNSGSFSNSNKRSSSSSEDKTPSPPPKRQKVDNGAAASEKPMPAAENSKELGTPEPPADSVECAAQDAQISGAASPDGKAEATPPIADGSTPTVVADKPRGSFSSWSVHPKQNPNFEASVPWCRLLSQSAQNPNVLICTPNFTIGSSRSCNFVLKDQTISANLCKIKHTQREGSVVAVLESMGSKGSVVVNGTLVKKSTSCMLNSGDEVVFGLLGNHSYIFQQINPEVTVKAAEIQGGVGKFFQFERRAGDLAGASILASLSSLRPELTRWKSPSQTASKPQQGTDVSSHSVLPDGTETELDGLEGNSAPNVATDKASDVGTSDKNSPMDCDPDDAGTEAGNVFEERNGTRDAQAASTSGTSVRCAVFKEDVHAAILDGKEIEVSLDNFPYYLSENTKNVLIAACVIHLKHKELVKYTTDLTTINPRILLSGPAGSEIYQEMLAKALAKYFGAKLLIFDSHSLLGGLSSKEAELLKDGFSADKSCGYAKQSPTATDMARCMDPSASEPETPNSSNAPTPYGFESQPKLEADNVPSTSGTAKNCVFKLGDRVKYSSSSGGLYQLQTISSSNRIFRGPANGSRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGLCEPGQGFFCNVTDLRLENSGIEELDKLLINTLFEVVVSESRDAPFILFMKDAEKSIVGNGDPFSFKSRLENLPDNVVVIGSHTHTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEAPKPNKTLTKLFPNKVTIHMPQDETLLASWKQQLDRDVETLKIKGNLHNLRTVLSRCGVECEGLETLCIKDQTLSIENAEKIVGWALSRHLMQNAETDPDAKLVLSCESIQYGIGILHAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPNDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSSDINMDAIASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKEQAAAVSEGRPAPALSGSADIRSLNMEDFKYAHQQVCASVSSESINMTELQQWNELYGEGGSRVKKALSYFM 1230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01889 1230 ProSitePatterns AAA-protein family signature. 1069 1088 IPR003960 GO:0005524|GO:0016887
Gma04g01889 1230 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 108 1230 - -
Gma04g01889 1230 CDD FHA 151 251 IPR000253 GO:0005515
Gma04g01889 1230 Gene3D - 1098 1192 - -
Gma04g01889 1230 CDD AAA 964 1097 - -
Gma04g01889 1230 Gene3D - 924 1205 IPR027417 -
Gma04g01889 1230 SMART AAA_5 962 1099 IPR003593 -
Gma04g01889 1230 MobiDBLite consensus disorder prediction 299 370 - -
Gma04g01889 1230 MobiDBLite consensus disorder prediction 535 550 - -
Gma04g01889 1230 Pfam ATPase family associated with various cellular activities (AAA) 966 1095 IPR003959 GO:0005524|GO:0016887
Gma04g01889 1230 MobiDBLite consensus disorder prediction 525 566 - -
Gma04g01889 1230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 925 1204 IPR027417 -
Gma04g01889 1230 MobiDBLite consensus disorder prediction 340 354 - -
Gma04g01889 1230 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 108 1230 - -
Gma04g01889 1230 MobiDBLite consensus disorder prediction 28 51 - -
Gma04g01889 1230 Pfam AAA+ lid domain 1119 1154 IPR041569 -
Gma04g01889 1230 Pfam FHA domain 172 241 IPR000253 GO:0005515
Gma04g01889 1230 MobiDBLite consensus disorder prediction 16 125 - -
Gma04g01889 1230 MobiDBLite consensus disorder prediction 299 324 - -
Gma04g01889 1230 Gene3D - 150 258 - -
Gma04g01889 1230 SUPERFAMILY SMAD/FHA domain 149 250 IPR008984 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01889 Gma-Chr4 49130289 49154305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01889 925 1177 Calmodulin-binding Proteins AT3G56690 41.154 2.47e-43 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01889 - - gmx:100780098 2279.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01889 04 49130289 49154305 Gma04g01889 04 49130289 49154305 ECH
Gma04g01889 04 49130289 49154305 Gma06g01522 06 14661950 14682119 GST
Gma17g01200 17 10548167 10560499 Gma04g01889 04 49130289 49154305 PCT
Gma05g00445 05 4230856 4248403 Gma04g01889 04 49130289 49154305 PCT
Gma04g01889 04 49130289 49154305 Gma17g01200 17 10548167 10560499 PCT
Gma04g01889 04 49130289 49154305 Gma05g00445 05 4230856 4248403 PCT