Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01886 ATGTCCGCTCTCACATCTCTCTCACTCTCTCTTCGCACACTCTCCCTCCGCCCCAAACCAACAACCTCACTTTCCGCTTCACTCTCTGCAATCCCAGGAAGTAGCGATGGATCTAAAACCAAAGTACCTCCCCGCAAAAGAACGAGGAGAATAGAAGGCCCTAGAAAGAGCATGGAGGACTCCGTTCAACGAAAGATGGAGCAGTTTTACGAAGGCTCCGATGGGCCTCCGCTTCGCGTTCTGCCCATTGGCGGTTTGGGAGAAATTGGGATGAATTGCATGCTAGTCGGGAACCATGACCGCTACATTCTCATTGATGCTGGTGTCATGTTTCCAGATTATGATGAACTTGGAGTTCAAAAGATTATACCTGATACCACGTTTATAAGAAAGTGGAGCCACAAGATTGAAGCGCTTGTCATAACGCATGGTCATGAAGATCATATTGGTGCGTTGCCTTGGGTCATTCCAGCATTGGATTCCAATACACCAATTTTTGCATCTTCCTTTACATTGGAGCTTATGAAAAAACGTTTGAAGGAACATGGTATTTTCGTTCCATCTAGACTCAAAGTATTTAGAACAAGGAAGAAGTTTGTGGCTGGGCCATTTGAGATAGAACCCATCAGGGTGACCCATTCTATTCCTGATTGTTGTGGACTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATTGATGAAACACCACTTGATGGGAAAGTTTTTGATCGTGAAGCTTTAGAGGAACTCTCTAAAGAAGGAGTGACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAATTAGTGAATCTGTTGTGGCAGATGCTTTGTTGAGACATATTTCAGCATCTAAAGGAAGGGTTATTACTACCCAATTTGCATCAAATCTACATCGGCTTGGTAGTGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCTTTAAGGACGTATTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCTCCAAAGGATCTGCTAATTGTAACAACAGGTTCTCAAGCAGAACCACGTGCTGCCTTGAACCTTTCATCTTACGGAAGTAGTCATGCTTTCAAACTAACCAAGGAAGATGTTGTTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGAAAATGCTAAACCGCATATCAGAGATTGGATCAACAATTGTTATGGGGAAAAATGAAGGTCTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAAGAAGTACTTAGAATAGTGAAGCCACAACATTTTCTTCCAATCCATGGAGAACTTTTGTTCCTGAAGGAACATGAATTACTTGGAAAATCAACTGGGATACGGCACACTGCTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCACATTTGAGAAATAGAAGAGTTCTTTCCAATGGTTTCATTTCCCTTGGAAAAGAGAACTTACAGTTGAAATATAGTGATGGCGATAGAGCATTTGGTACATCTAGTGATCTCTTCATTGATGAAAGATTGAGAATCGCATTAGATGGCATCATTGTCATTAGCATGGAAATATTTCGCCCTAAAGTTTTAGATGGTTCGGCTGAAAACACCTTGAAAGGGAAGATAAGGATTACCACGAGATGCTTATGGCTTGACAAGGGGAAACTGATGGATGCACTCTACAAAGCTGCCCGTGCAGCTCTTTCAAGCTGCCCTGTAAAGAGTCCACTTGCTCACATCGAAAGAATTGTGTCTGAGGTATTGAGGAAGACGGTGAGGAAGTACAGTGGTAAACGGCCTGAAGTTATTGCCATTGCCATAGAAAAACCTGCAGCCATTCTTGCTGATGAGATAAACACGAAATTGTCTGGCAAATCCCATGTGGGTCTTGGAATGTCAGCCTTAAGTAAAGCAGTGGATGGACATAGGAAGGGAAATCAGTCCACTGCACTGCAAGTTAAAGATGATAGTATTGGTAAtgcaagtggagcagggggtgatttatccgatgaaaacaacactgcaagtgggcctgagggttatttatccgaggaagacaacactgcaagtggggccgagggtgatttatcTGAGTCAGAGGATTCAGATGAATTTTGGAAACCATTCATTACATCATTACCAGTTGAGAAGTCAATCAGTGCTGACAATAGTTATGTTTCACAAAAGGAGCAAAAGTCCAATTTGAAGAAAGATGATTCTGAAGACATTGATGAAGCCAAGTCAGAAGAAACGTCTAATTCTGAACCCAAGCTTTCAAAATCAGTTAAGAGAAATAAATGGAAAACTGAGGAAGTTAAGAAGCTGATTGGTATGCGTGGGGAACTAAGTGACAGATTTCAAGTTGTGAAGGGAAGGATGGCCCTCTGGGAAGAGATTTCTCAAAAATTGTTGGCTGATGGGATCAGCAGAAGTCCCGGACAGTGCAAATCTCTGTGGACATCTTTGGTAGTCAAATATGAGGGGATTAAGAATAAAAATGATAGCAAGAAAAGTTGGCCATACATAGAAGACATGGAAAGGATAATAGTGTCTCCTCTTGCGTTCTGCTTTGCTGGCTGGTTTTCTCTTGATCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGGTGTAG 2718 0.4036 MSALTSLSLSLRTLSLRPKPTTSLSASLSAIPGSSDGSKTKVPPRKRTRRIEGPRKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDSNTPIFASSFTLELMKKRLKEHGIFVPSRLKVFRTRKKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRHISASKGRVITTQFASNLHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLSSYGSSHAFKLTKEDVVLYSAKVIPGNESRVMKMLNRISEIGSTIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDRAFGTSSDLFIDERLRIALDGIIVISMEIFRPKVLDGSAENTLKGKIRITTRCLWLDKGKLMDALYKAARAALSSCPVKSPLAHIERIVSEVLRKTVRKYSGKRPEVIAIAIEKPAAILADEINTKLSGKSHVGLGMSALSKAVDGHRKGNQSTALQVKDDSIGNASGAGGDLSDENNTASGPEGYLSEEDNTASGAEGDLSESEDSDEFWKPFITSLPVEKSISADNSYVSQKEQKSNLKKDDSEDIDEAKSEETSNSEPKLSKSVKRNKWKTEEVKKLIGMRGELSDRFQVVKGRMALWEEISQKLLADGISRSPGQCKSLWTSLVVKYEGIKNKNDSKKSWPYIEDMERIIVSPLAFCFAGWFSLDQIAIASSLLPESV 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01886 905 Pfam Myb/SANT-like DNA-binding domain 792 876 IPR044822 -
Gma04g01886 905 Coils Coil 757 777 - -
Gma04g01886 905 ProSiteProfiles Myb-like domain profile. 787 851 IPR001005 -
Gma04g01886 905 MobiDBLite consensus disorder prediction 751 791 - -
Gma04g01886 905 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 1 878 - -
Gma04g01886 905 SUPERFAMILY Metallo-hydrolase/oxidoreductase 78 492 IPR036866 -
Gma04g01886 905 CDD RNaseJ_MBL-fold 81 492 - -
Gma04g01886 905 Pfam Metallo-beta-lactamase superfamily 91 236 IPR001279 -
Gma04g01886 905 MobiDBLite consensus disorder prediction 694 711 - -
Gma04g01886 905 Gene3D - 82 494 IPR036866 -
Gma04g01886 905 CDD GT1 793 858 - -
Gma04g01886 905 MobiDBLite consensus disorder prediction 670 684 - -
Gma04g01886 905 MobiDBLite consensus disorder prediction 19 58 - -
Gma04g01886 905 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 435 472 IPR011108 -
Gma04g01886 905 MobiDBLite consensus disorder prediction 667 731 - -
Gma04g01886 905 Gene3D - 795 855 - -
Gma04g01886 905 SMART Lactamase_B_5a 90 287 IPR001279 -
Gma04g01886 905 MobiDBLite consensus disorder prediction 759 791 - -
Gma04g01886 905 PANTHER RIBONUCLEASE J 1 878 - -
Gma04g01886 905 MobiDBLite consensus disorder prediction 19 36 - -
Gma04g01886 905 Gene3D - 279 429 IPR042173 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01886 Gma-Chr4 49103583 49118856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01886 779 879 Trihelix Transcription Factor Family AT2G38250 33.645 1.43e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gma04g01886 Lactamase_B 4e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01886 - - gmx:100783850 1684.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01886 04 49103583 49118856 Gma04g01886 04 49103583 49118856 ECH
Gma04g01886 04 49103583 49118856 Gma06g01526 06 14698396 14707701 GST
Gma17g01193 17 10470702 10479464 Gma04g01886 04 49103583 49118856 PCT
Gma04g01886 04 49103583 49118856 Gma17g01193 17 10470702 10479464 PCT