Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01865 ATGTGTGGCGAGAGACAACGAGTTTCTGCTTGTGCTGCCTGCACCAACAACTGTCTACTGTTCCACAAAACAAAACAAACCTCACCTACCTCTTTCTTCAAGCTCATCACTAAACGAGAACATTTAACAACTTTGTATATCCCTCCTGCTTTTAGTAGTACTGTGTCAGACTTGGTTAATAAGAAAATTGCTCTCAATGATTCAAGTGAGCGGCAATGGAATGTAAAAGTATCAGGGTTTAATGGTTCTTTTGCTTTCATGGAAGGATGGAGTACTTTTTCATTGAATCATGGGGTTAAAGTTGGATATCTTCTGGTATTCAATTACGTTAAGGATTTGCACTTTGATGTCAAGATCTATGATCCATCTGCTTGTGAAAAGCTTAATTTTCCTAAAACAAGAAATCAGAAGAAAAGAAGTAGGGGGAGAAGTGGCTCTCCAGTTAGAGATTGTATGTTGGTTGGTCAAGAATCCAATGCCTTAGTTGTCACCCAACATTATGTGCCGAAAATGAAAAGCCAGCGCAGTGAGGTTGACTTAGTAGTACGAAAAAATGGTGAAGAGAGTGGCCAACTTATGTGCATATCAGAACTCCATGAAGACCCATGTTATTCGACAAGCCTAGAATTTGACCAGAGCCATGGTGTTAATGGGACCATGAAAATTGTGAATGGAGATTTAAAAGTTTCTAATGTTGATTACGGATCTCACATATTTGAAAATGATGCAATCGTATGTAGTAAAGATACTATGTTTGAAGGGATATTCAGTATGGCAGCTGCCTTAGATATATCTGAATTTGAAATGTCTGGGAGAAGTACTTCTCTAGGTGAGGCAGACAAAAGCACACATGACAAGACTTCAACTTTGAATATTGAAGAAAACAAAGAGAGCAAAGCCATCATGTACAGCGGGGAAGCTCAAGAGTGCCAATTTTCCAATGTCTTAGGTGAAATGAAGAAATTGCCTATGGACATGACTCCCAAATTGTGTGGTTCCATGGATAAATTGAATATAACAGAGTTGCCAAAGGAGATTAAGGACTCTGACATATCTAATCAAGATGATGAGAGCCACTTTAAAACTGCACCCCCTCTCTCCTGTGTGGTGACCAATGATAATGATAATGTTTCCCTTAAATTGCCCGAATACCTGCCTTTGACTCGCAGGGTAAAACCATTCACGCATAAGAAGATGGTAGTGTTACTTCGGGATTCACAGATGAGATTGTGGCCTGTCTTTTACCATGAACAACCTCGGTTACTGACACATGGATGGTTAGATTTTAGCAGAGCTAATAACATTCAACCTGAAGATGAGTGTATTTTTGAGGTTGAGCCTGACCCTGAGAGCAGGTATCAACGTATCTTAGCTCTTGGAATGCATGAGTGCCGCGAACATTTGTATTGGTCTGTAGTTCAAACTTCTAAGCATTCAAGCCTGGAAACGTTACCTCTGGAATATGCAATTCAAACAAACACTGTGATCGACACCTACCACTACTAG 1506 0.3991 MCGERQRVSACAACTNNCLLFHKTKQTSPTSFFKLITKREHLTTLYIPPAFSSTVSDLVNKKIALNDSSERQWNVKVSGFNGSFAFMEGWSTFSLNHGVKVGYLLVFNYVKDLHFDVKIYDPSACEKLNFPKTRNQKKRSRGRSGSPVRDCMLVGQESNALVVTQHYVPKMKSQRSEVDLVVRKNGEESGQLMCISELHEDPCYSTSLEFDQSHGVNGTMKIVNGDLKVSNVDYGSHIFENDAIVCSKDTMFEGIFSMAAALDISEFEMSGRSTSLGEADKSTHDKTSTLNIEENKESKAIMYSGEAQECQFSNVLGEMKKLPMDMTPKLCGSMDKLNITELPKEIKDSDISNQDDESHFKTAPPLSCVVTNDNDNVSLKLPEYLPLTRRVKPFTHKKMVVLLRDSQMRLWPVFYHEQPRLLTHGWLDFSRANNIQPEDECIFEVEPDPESRYQRILALGMHECREHLYWSVVQTSKHSSLETLPLEYAIQTNTVIDTYHY 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01865 501 SUPERFAMILY DNA-binding pseudobarrel domain 383 448 IPR015300 -
Gma04g01865 501 SMART B3_2 32 123 IPR003340 GO:0003677
Gma04g01865 501 Pfam B3 DNA binding domain 32 120 IPR003340 GO:0003677
Gma04g01865 501 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0905400-LIKE ISOFORM X1 9 450 - -
Gma04g01865 501 ProSiteProfiles B3 DNA-binding domain profile. 30 123 IPR003340 GO:0003677
Gma04g01865 501 Gene3D - 348 454 IPR015300 -
Gma04g01865 501 CDD B3_DNA 369 444 IPR003340 GO:0003677
Gma04g01865 501 Gene3D - 23 125 IPR015300 -
Gma04g01865 501 CDD B3_DNA 31 121 IPR003340 GO:0003677
Gma04g01865 501 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 9 450 IPR044837 -
Gma04g01865 501 SUPERFAMILY DNA-binding pseudobarrel domain 27 125 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01865 22 131 B3 DNA Binding Superfamily AT4G01580 30.769 1.85e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma04g01865 B3 6.7e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01865 - - gmx:102661564 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01865 04 48877468 48883363 Gma04g01865 04 48877468 48883363 ECH