Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01861 ATGGAGCCCCTTGAATCCGAATCGGTTAGCTCCTCCGCCAAGGACCCGCTATTGGGTGAACCATCTTCCTCTGTTCACCCCCTCGATCATGATCCTCAACCCTCAGATCTCAATCACGTTACCCCGGTTGATGATGCACTTGGTGAGGAGCTTCAGGGGAAGTTGGATTTGAAGGATGAGGGTGAAAGTGATAATAAAGGTTCGAACTTGGAAGACGGGGGTGAAAAATTGAGCGAGGATAAAGGTTCGAACTTGGAAGATGAGAGTGGAAAATTGAGTGATGAAGGTGCTGCCCCAGAAGGTGGCAAGGGAGAAGGGTGTGATGGTGATCTTGGTGGTGTTGCTAATGACgatgatgttgttgtagttgatgatgatgatggtTGGAATGGTGGTGGTGATGAGGGGTGTGATTGTATTGAGAATGTGAATGTGAATGGGAGTGAGAGTGATAAGGTGGGTGGAGATGTTGAGGCAGTTAAGGATGAGAGGAGCAGTGGTAGAGCTCAACAATACCCTTTGAGGCCTGAGGCTGAAGACTGTGCATTTTATCTCAAAACTGGGACTTGCAAATTTGGATTCAATTGCAAATTCAATCATCCGCTTAGGAGGAAAAACCAGGCTAAAAAAGAGAATGCGGGAGAAAGAGAAGAACAGGCAGAAAGATCAGGCCAGATGGAATGCAAGTATTATTTAAGGTCTGGGGGGTGTAAGTTCGGAAAGGCTTGTAAGTTTAATCACACAAGAGGAAAGAGTTCATCAGCATCCGCTGCCGAGCTTAACTTCCTTGGCCTGCCTATTCGTGTGGGAGAGAAAGAGTGCCTCTATTACATGCGCACTGGCTCTTGTAAGTTTGGAGCAAACTGCAGGTTTAATCATCCCGATCCTACAACTGTTGGAGGAGGTGATTCTCCTTCTGGTTATGGTAATGGAAGTTCTATTTCGTTACAAGGTGTATCACAATCATCTATATCCTCATGGTCTTCTACTAGACCATTAAATGAATCTGCTCCTTTTGTGCCGGTGATACTTTCACCTAATCCAGGGGTTTCTCCCCAAAGTTCTGAATGGAATGGATATCAGGCACCTGTCTATCTCTCTGAGAGGAGTCTGCATCCACCTTCAACATATGTCATGAACAACCCAGCTATGGAATCAAATGTTTATATGCACCATCAAAAACAAATGCTGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCCGAATGCAGCTATTTCTTAAAAACTGGGGATTGCAAGTTTAAATCTAATTGTAAATTTCACCATCCAAAGAATCGGATAGCAAGATTACCTCTATGCAACCTCAGTGACAAGGGTCTACCTTTGAGACCGGACCAGAATGTTTGCACATATTACAGACGTTATGGAATTTGCAAATTTGGACCGGCGTGTAAGTTCGATCACCCAGCGCCCTCAGCTATGGCTGGACATGATCAACAATCCACATATATAAACTCAGCTGGTGTTGATGTGGCTGAAAATGGAGGTGTCGAAGATGGGAATCAGCAGTCTGTGTAA 1539 0.4418 MEPLESESVSSSAKDPLLGEPSSSVHPLDHDPQPSDLNHVTPVDDALGEELQGKLDLKDEGESDNKGSNLEDGGEKLSEDKGSNLEDESGKLSDEGAAPEGGKGEGCDGDLGGVANDDDVVVVDDDDGWNGGGDEGCDCIENVNVNGSESDKVGGDVEAVKDERSSGRAQQYPLRPEAEDCAFYLKTGTCKFGFNCKFNHPLRRKNQAKKENAGEREEQAERSGQMECKYYLRSGGCKFGKACKFNHTRGKSSSASAAELNFLGLPIRVGEKECLYYMRTGSCKFGANCRFNHPDPTTVGGGDSPSGYGNGSSISLQGVSQSSISSWSSTRPLNESAPFVPVILSPNPGVSPQSSEWNGYQAPVYLSERSLHPPSTYVMNNPAMESNVYMHHQKQMLVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPLCNLSDKGLPLRPDQNVCTYYRRYGICKFGPACKFDHPAPSAMAGHDQQSTYINSAGVDVAENGGVEDGNQQSV 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01861 512 SMART c3hfinal6 270 295 IPR000571 GO:0046872
Gma04g01861 512 SMART c3hfinal6 222 249 IPR000571 GO:0046872
Gma04g01861 512 SMART c3hfinal6 404 431 IPR000571 GO:0046872
Gma04g01861 512 SMART c3hfinal6 175 202 IPR000571 GO:0046872
Gma04g01861 512 SMART c3hfinal6 450 477 IPR000571 GO:0046872
Gma04g01861 512 SUPERFAMILY CCCH zinc finger 409 433 IPR036855 GO:0046872
Gma04g01861 512 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 227 247 IPR000571 GO:0046872
Gma04g01861 512 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 179 201 IPR000571 GO:0046872
Gma04g01861 512 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 453 476 IPR000571 GO:0046872
Gma04g01861 512 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 406 431 IPR000571 GO:0046872
Gma04g01861 512 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 271 294 IPR000571 GO:0046872
Gma04g01861 512 MobiDBLite consensus disorder prediction 1 124 - -
Gma04g01861 512 MobiDBLite consensus disorder prediction 1 18 - -
Gma04g01861 512 Gene3D - 446 495 - -
Gma04g01861 512 ProSiteProfiles Zinc finger C3H1-type profile. 222 250 IPR000571 GO:0046872
Gma04g01861 512 MobiDBLite consensus disorder prediction 49 94 - -
Gma04g01861 512 ProSiteProfiles Zinc finger C3H1-type profile. 175 203 IPR000571 GO:0046872
Gma04g01861 512 SUPERFAMILY CCCH zinc finger 269 295 IPR036855 GO:0046872
Gma04g01861 512 ProSiteProfiles Zinc finger C3H1-type profile. 404 432 IPR000571 GO:0046872
Gma04g01861 512 Gene3D - 153 211 - -
Gma04g01861 512 Gene3D - 359 437 - -
Gma04g01861 512 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 11 506 - -
Gma04g01861 512 ProSiteProfiles Zinc finger C3H1-type profile. 268 296 IPR000571 GO:0046872
Gma04g01861 512 Gene3D - 212 298 - -
Gma04g01861 512 PANTHER PROTEIN PHOSPHATASE RELATED 11 506 - -
Gma04g01861 512 SUPERFAMILY CCCH zinc finger 174 203 IPR036855 GO:0046872
Gma04g01861 512 ProSiteProfiles Zinc finger C3H1-type profile. 450 478 IPR000571 GO:0046872
Gma04g01861 512 SUPERFAMILY CCCH zinc finger 451 478 IPR036855 GO:0046872
Gma04g01861 512 SUPERFAMILY CCCH zinc finger 226 250 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01861 Gma-Chr4 48767685 48772935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01861 400 499 C2H2 Transcription Factor Family AT3G02830 45.631 7.08e-22 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma04g01861 zf-CCCH 2.1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01861 - - gmx:100776363 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01548 06 15012055 15018382 Gma04g01861 04 48767685 48772935 ECH
Gma04g01861 04 48767685 48772935 Gma04g01861 04 48767685 48772935 ECH
Gma04g01861 04 48767685 48772935 Gma06g01548 06 15012055 15018382 GST
Gma17g01178 17 10318687 10322904 Gma04g01861 04 48767685 48772935 PCT
Gma05g00421 05 3981288 3985958 Gma04g01861 04 48767685 48772935 PCT
Gma04g01861 04 48767685 48772935 Gma17g01178 17 10318687 10322904 PCT
Gma04g01861 04 48767685 48772935 Gma05g00421 05 3981288 3985958 PCT