Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01860 ATGGTGGGAGTTTGTGAGGGAAACGGCGAGGTTTTGGCATGGCTGAAATCGATGCCGGTGGCGCCGGAGTACAGGCCGAGCGCGGCGGAGTTCCAGGATCCAATCGGGTACATATTCAAGATCGAGAAGGAAGCTTCAAAGTACGGAATCTGCAAAATCATCCCTCCCTTCCCACCTTCTTCCAGGAAAACCGCAATCGCCAACCTCAACCGCTCACTCGCGGAAGCCGGCTCCACATTCACCACGCGCCAGCAGCAGATCGGGTTCTGCCCCCGCAGGCCCAGGCCAGTCCAGCGTCCCGTCTGGCAGAGCGGCGATCGCTACACCTTCAGCGAGTTCGAGTCCAAGGCCAAGTCCTTCGAGAAGACATACCTCAAACGCCACTCCAAGAAGGGCTCGGGCTCCGGCTCGGGCCTGGGCCCGTTGGAGACGGAAACGCTGTTCTGGAAAGCCACGCTGGACAAACCCTTCTCCGTGGAATACGCTAATGACATGCCTGGCTCGGCGTTTTCTCCGAAATGCCGGCGCACAGGGGATCCCAGCTCACTGGCGGACACTCCGTGGAACATGAGAGCGGTTTCAAGGGCCAAAGGTTCGCTCTTACAGTTCATGAAAGAGGAGATTCCGGGCGTTACTTCCCCTATGGTCTACGTTGCCATGCTCTTCAGCTGGTTCGCGTGGCACGTCGAGGACCATGACTTGCACAGCTTGAATTACCTCCACATGGGCGCCGGCAAGACCTGGTACGGCGTCCCCCGCGACGCCGCCGTCGCTTTCGAGGAAGTCGTTAGGGTTCACGGCTACGGCGGAGAGATCAACCCGCTCGTTACTTTTGCTATTCTAGGTGAGAAAACCACAGTGATGTCGCCTGAAGTATTTATTAGTGCAGGCGTTCCATGCTGCAGGTTAGTACAAAATGCCGGGGAATTTGTTGTGACATTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAATTGCGGAGAGGCAGCGAACATTGCAACACCTGAGTGGCTGAGGTTTGCTAAAGATGCTGCTATTCGGAGGGCTTCACTAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATTCCTGCGGGCATCAGTGCTGAACCTCGTAGTTCTCGTCTTAAAGATAAGAAGAAGGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTCCAGGATGTCCTACAGAACAATGATCTGCTTCATTTTCTTGGGCAAGGATCAGCTGTAGTACTTCTTCCTCGTAGCTCTGTTGACATTTCTGTTTGCTCAAAATTACGTGTTGGATCCCAGCAATCTATTAATGTAAGCAATTCTGAGGGAATGCATTCTTCAAAAGGTTTTGTTTCTGATGATCTGGCATTCAACAGGAGTCATGGAATCAAGCAAGGAAAAAGTTTCTATTCTGTGAAAGACAAGTTTAGTACGTTGTGTGAAAGGGACAGGATTTCCTCTTTTGATGTAAATGATAACATAAGCATTTCAAGTTCTAATCCACTTCAAAGAGACACTGAAAGAGAAACTTGTCAAGGAGATGGGTTGTCAGATCAGAGACTGTTTTCATGTGTCACATGTGGAATATTAAGCTTTTCCTGTGTTGCTATTGTACAGCCTAGAGAACCAGCAGCTAGATATCTTGTGTCAGCTGATTGCAGTTTCTTTAATGATTCGGTTGTTGGTTCTGGAATATCTAAAAATAAATTTACTATTGCCCGTGAAGAAGCAATTATTCCTGAGCCAAATATTTATACAGGCAGTGAAAATGGCAATACAGCTCTTGCATTATTGGCTTCAGCATATGGAAATTCTTCTGACTCTGAGGAAGATCAGATTGCGGTTGACAGTCATGAATCAAATGTGATAAACTCTGCTTCAGAAAGTTTACTTTCTTACACTCGAGATTCCCATGCTAGTCCCATGACTGCACTTGATAGGGGAGATTATATTCCTTCAAAGAGTTCCAGCTATGAGGATTTTATACATCGTAGATTAGAGTGTTTTGAAAACACAAGGACGGTGGCTAATTCCACCTCTAATTGTTCCCAAGATGCTCATAATGCTGAAAGGTCATTGTCTAACAATGCTATGATGGTTCCCTTTGATAATAAAAAAGCTTCGATGGTGCTACAATCTGATGAAGACTCATCCAGAATGCATGTTTTTTGTCTTGAGCATGCTGCAGAAGCAGAGCAGCAACTTCGCCCAATTGGTGGAGCCAACCTATTGCTCCTATGTCATCCAGACTATCCCAAGATAGAGGCTGAGGCAAAAATGGTGGCAGAAGATTTGGGTATTGATTACATGTGGAAGAATATTGAATACAGTCATGCTTCCAAGGAGGATGAGGAGAAGATCCAGTCAGCTCTGGATAGTGAGGAAGCTATTCCTGGGAATGGTGACTGGGCTGTAAAGCTAGGAATCAATCTCTTTTATAGCGCAAATCTTAGCCGTTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATACTCTGCATTTGGTTGTAGCTCTCCAGCAAGCTCACCTGTAGAGCCAAAGGTCTACCAAAGAAGGGTCAACAGGCAGAAAAAGATTGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCGAAAAGAGATTTTGAAGATATTGAGGATGAGAAACTCTTAATAGGGTTGATATTACCTGATGATAAAATTGAAAGATCAGAAAGTACACCCAAAAGCGAAGCTACTAGCAGAAAATCAGATAATTCCACTGAAGATAAACCCAACTTGCTTCCAAGGAGCATTCTTCGAAGTAAGAAAGTCAGGCATGTTGAGAGAGACTGTGCTGCTTTGAAAGGGGGTTATTCTCCTCCATATCATCATAGAAAACCTTCAAACAACCAAACAAACTTCACTGAAAGTTATGCAGTTTCTGATGATTCGCTTGATGATGATGATCACATGCAGCAAAGGAGGAATGTTAAAATTGAAAAGGCTAAATTTATGGACAATGATGTGGTTTCAAATGATACGATGGACAATGATTCTGATTGGCAGCAGAGGGAAGACGTTAGCAGCAAGCAAGTTGAAGATACGGAGGGAGATGCAATTTCAGAGGATTCTTTGGATGTTGGTTCTCTTCAGCTGCAAAGGAAGACTTCCAAAGGCAAGCATCCAAAATACATTGGTGAAGAAGATATAATTTCTGATGACCAAATGGAGAGTCATTTTCAAAAGAGGCAAAAGAGAATTCCTGAAAGCAGGCAGGGCAAATACCTTACTGGAAAAGATATAATATCTGATGACCAACTAGAGCTGAAAATGAAGAAGCAGCAACGGAGGAATCCTAAAAGCAGGCAAGCCAAATACCTCAATGAAGAGGATATTGCATCAGATGACCAATTGGAGGGCCATTATCGTAGATATCAAAGAAAGAATCCTAAAGGCAGACAGGCCACATGTGTAGCAGGGGAAGATCAAATGTCTGATGACCAATTGGAGAATCATTGTCAGAAGCAGCAAACAAGTTTCTATAGGAAAAGGCAAAACAAAGGCATTGAAAGAGAGGTTAAAAATGAAATGTCTGATGACCACTTGGAGGACCATTTTCTGAAGCAGCAGCAAAGATTTCCTAAGAGCAGGCGAAACAAACACACTGATAAAGAAGACACGGATGACTTAGCTGAGAATAATTCTCATCTGCTGCGTAGAACTCCTAAAAGGAAGCAAGCTAAATGCATGGAAGACGATGATATGAATTCAGATGATGAAATGGAAGATGATCAGCAGCTGAGGAGGACTCTCCGAAGTAAACAAGCTAAACCAAAGACACTTCAACAGATGAAACAAGCTAATTCCCTCCAAGCGAAAAAGCAGGCATCTCGGCCCATAAAACAGTGCTCTCGGATGCTTGTGAAATCAAAGGCTCCTCAGCAAATTAAACAGCCTTCTCATTTGCCGAATAAGCAATCTAATAACACCCAGGAATTTAGTTTAGATATGGAAGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGGAAGAGAGCCACAAAAGCTCAGGAATCTGAAAGAAAATTGAAACACAAGCAAACAAAAAGGAAGAAGGTGAAGAATGCTGCAGCTGCAAAGGTTTCAGTTGGCCATGCCAAAATGAAGGATGGGGAAGCCGAATATCAGTGTGATATTGATGGGTGCACTATGAGTTTTGGGTCAAAACAGGAGCTGATGCATCATAAGAGAAACATCTGCCCTGTAAAAGGGTGTGGGAAGAAGTTTTTTTCACACAAGTATCTGGTGCAGCATCGTCGAGTTCATGAGGATGAGCGCCCCTTGAAGTGCCCTTGGAAGGGATGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACAGAGCACATTCGAGTCCACACTGGTGCACGACCTTATGTATGTGCTGAGCCAGATTGTGGACAAACATTCAGATTTGTTTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCAGCAAAGAAGAATTGTCAATAG 4569 0.4452 MVGVCEGNGEVLAWLKSMPVAPEYRPSAAEFQDPIGYIFKIEKEASKYGICKIIPPFPPSSRKTAIANLNRSLAEAGSTFTTRQQQIGFCPRRPRPVQRPVWQSGDRYTFSEFESKAKSFEKTYLKRHSKKGSGSGSGLGPLETETLFWKATLDKPFSVEYANDMPGSAFSPKCRRTGDPSSLADTPWNMRAVSRAKGSLLQFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRFAKDAAIRRASLNYPPMVSHFQLLYDLALALCSRIPAGISAEPRSSRLKDKKKGEGETVIKELFVQDVLQNNDLLHFLGQGSAVVLLPRSSVDISVCSKLRVGSQQSINVSNSEGMHSSKGFVSDDLAFNRSHGIKQGKSFYSVKDKFSTLCERDRISSFDVNDNISISSSNPLQRDTERETCQGDGLSDQRLFSCVTCGILSFSCVAIVQPREPAARYLVSADCSFFNDSVVGSGISKNKFTIAREEAIIPEPNIYTGSENGNTALALLASAYGNSSDSEEDQIAVDSHESNVINSASESLLSYTRDSHASPMTALDRGDYIPSKSSSYEDFIHRRLECFENTRTVANSTSNCSQDAHNAERSLSNNAMMVPFDNKKASMVLQSDEDSSRMHVFCLEHAAEAEQQLRPIGGANLLLLCHPDYPKIEAEAKMVAEDLGIDYMWKNIEYSHASKEDEEKIQSALDSEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYSAFGCSSPASSPVEPKVYQRRVNRQKKIVAGKWCGKVWMSNQVHPLLAKRDFEDIEDEKLLIGLILPDDKIERSESTPKSEATSRKSDNSTEDKPNLLPRSILRSKKVRHVERDCAALKGGYSPPYHHRKPSNNQTNFTESYAVSDDSLDDDDHMQQRRNVKIEKAKFMDNDVVSNDTMDNDSDWQQREDVSSKQVEDTEGDAISEDSLDVGSLQLQRKTSKGKHPKYIGEEDIISDDQMESHFQKRQKRIPESRQGKYLTGKDIISDDQLELKMKKQQRRNPKSRQAKYLNEEDIASDDQLEGHYRRYQRKNPKGRQATCVAGEDQMSDDQLENHCQKQQTSFYRKRQNKGIEREVKNEMSDDHLEDHFLKQQQRFPKSRRNKHTDKEDTDDLAENNSHLLRRTPKRKQAKCMEDDDMNSDDEMEDDQQLRRTLRSKQAKPKTLQQMKQANSLQAKKQASRPIKQCSRMLVKSKAPQQIKQPSHLPNKQSNNTQEFSLDMEEEEEGGPSTRLRKRATKAQESERKLKHKQTKRKKVKNAAAAKVSVGHAKMKDGEAEYQCDIDGCTMSFGSKQELMHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPDCGQTFRFVSDFSRHKRKTGHSAKKNCQ 1522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01860 1522 SUPERFAMILY beta-beta-alpha zinc fingers 1477 1511 IPR036236 -
Gma04g01860 1522 MobiDBLite consensus disorder prediction 1195 1263 - -
Gma04g01860 1522 Gene3D Classic Zinc Finger 1486 1515 - -
Gma04g01860 1522 SMART JmjN_1 20 61 IPR003349 -
Gma04g01860 1522 MobiDBLite consensus disorder prediction 965 985 - -
Gma04g01860 1522 SMART c2h2final6 1429 1453 IPR013087 -
Gma04g01860 1522 SMART c2h2final6 1459 1483 IPR013087 -
Gma04g01860 1522 SMART c2h2final6 1489 1515 IPR013087 -
Gma04g01860 1522 SMART c2h2final6 1406 1428 IPR013087 -
Gma04g01860 1522 MobiDBLite consensus disorder prediction 1319 1344 - -
Gma04g01860 1522 MobiDBLite consensus disorder prediction 1071 1104 - -
Gma04g01860 1522 Pfam JmjC domain, hydroxylase 215 333 IPR003347 -
Gma04g01860 1522 PANTHER LYSINE-SPECIFIC DEMETHYLASE 7 1512 - -
Gma04g01860 1522 ProSitePatterns Zinc finger C2H2 type domain signature. 1461 1483 IPR013087 -
Gma04g01860 1522 SMART cupin_9 182 351 IPR003347 -
Gma04g01860 1522 MobiDBLite consensus disorder prediction 1352 1374 - -
Gma04g01860 1522 MobiDBLite consensus disorder prediction 1133 1156 - -
Gma04g01860 1522 ProSitePatterns Zinc finger C2H2 type domain signature. 1431 1453 IPR013087 -
Gma04g01860 1522 Gene3D Cupin 14 355 - -
Gma04g01860 1522 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 7 1512 - -
Gma04g01860 1522 ProSiteProfiles JmjC domain profile. 175 351 IPR003347 -
Gma04g01860 1522 ProSiteProfiles Zinc finger C2H2 type domain profile. 1489 1520 IPR013087 -
Gma04g01860 1522 Pfam jmjN domain 22 55 IPR003349 -
Gma04g01860 1522 ProSiteProfiles JmjN domain profile. 21 62 IPR003349 -
Gma04g01860 1522 SUPERFAMILY Clavaminate synthase-like 107 369 - -
Gma04g01860 1522 ProSiteProfiles Zinc finger C2H2 type domain profile. 1429 1458 IPR013087 -
Gma04g01860 1522 MobiDBLite consensus disorder prediction 1020 1391 - -
Gma04g01860 1522 MobiDBLite consensus disorder prediction 919 950 - -
Gma04g01860 1522 SUPERFAMILY beta-beta-alpha zinc fingers 1445 1487 IPR036236 -
Gma04g01860 1522 MobiDBLite consensus disorder prediction 919 940 - -
Gma04g01860 1522 ProSiteProfiles Zinc finger C2H2 type domain profile. 1459 1488 IPR013087 -
Gma04g01860 1522 ProSitePatterns Zinc finger C2H2 type domain signature. 1491 1515 IPR013087 -
Gma04g01860 1522 MobiDBLite consensus disorder prediction 1287 1309 - -
Gma04g01860 1522 MobiDBLite consensus disorder prediction 1029 1048 - -
Gma04g01860 1522 Gene3D Classic Zinc Finger 1429 1456 - -
Gma04g01860 1522 Gene3D Classic Zinc Finger 1457 1485 - -
Gma04g01860 1522 Coils Coil 1367 1387 - -
Gma04g01860 1522 Gene3D Classic Zinc Finger 1374 1428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01860 Gma-Chr4 48746206 48755475 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01860 1250 1519 C2H2 Transcription Factor Family AT3G48430 47.241 2.13e-70 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma04g01860 JmjC 1.2e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01860 - - gmx:100775813 2999.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01860 04 48746206 48755475 Gma04g01860 04 48746206 48755475 ECH
Gma04g01860 04 48746206 48755475 Gma06g01551 06 15051702 15061190 GST