Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma04g01859 | ATGGTGGGAGTTTGTGAGGGAAACGGCGAGGTTTTGTCATGGCTGAAATCGATGCCGGTGGCGCCGGAGTACAGGCCGAGCGCGGCCGAGTTCCAGGATCCAATCGGGTACATATTCAAGATCGAGAAGGAAGCTTCAAAGTACGGAATCTGCAAAATCATCCCTCCCTTCCCACCTTCTTCCAGGAAAACCGCAATCGCCAACCTCAACCGCTCACTCGCGGAAGCCGGCTCCACATTCACCACGCGCCAGCAGCAGATCGGGTTCTGCCCCCGCAGGCCCAGGCCCGTCCAGCGTCCCGTCTGGCAGAGCGGCGATCGCTACACCTTCAGCGAGTTCGAGTCCAAAGCCAAGTCCTTCGAGAAGACATACCTCAAACGCCACTCCAAGAAGGGCTCCGGCTCCGGCTCGGGCCTGGGCCCGCTGGAGACGGAGACCCTGTTCTGGAAGGCCACGCTGGACAAACCCTTCTCCGTGGAATACGCTAATGACATGCCTGGCTCGGCGTTTTCCCCGAAATGCCGGCACGCAGGGGATCCCAGCTCACTGGCGGATACTCCGTGGAACATGAGAGCGGTTTCGAGGGCCAAAGGTTCGCTCTTACAGTTCATGAAAGAGGAGATTCCGGGCGTTACTTCCCCTATGGTCTATGTTGCCATGCTCTTCAGCTGGTTCGCGTGGCACGTCGAGGACCACGACTTGCACAGCTTGAATTACCTCCACATGGGCGCCGGCAAGACCTGGTACGGCGTCCCCCGCGACGCCGCCGTCGCTTTCGAGGAAGTCGTTAGGGTTCACGGCTACGGCGGAGAGATCAACCCGCTCGTTACTTTTGCTACTCTTGGTGAGAAAACCACAGTGATGTCACCTGAAGTATTTATTAGTGCAGGTGTTCCATGCTGCAGGTTAGTACAAAATGCTGGGGAATTTGTGGTGACGTTTCCCAGAGCCTATCACTCAGGGTTTAGTCATGGTTTTAATTGCGGAGAGGCAGCAAACATTGCAACACCGGAGTGGTTGAGGTTTGCTAAAGATGCTGCTATTCGGAGGGCTTCATTAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTATGTTCTAGTATTCCTGCGAGCATCAGTGCTGAACCTCGTAGTTCTCGTCTTAAAGATAAGAAGAAGGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTCCAAGATGTGTTACAAAACAATGATCTGCTTCATATACTTGGGAAAGGATCAGATGTAGTACTTCTTCCTCATAGCTCAGTTGACATTTTTGTTTGCCCAAAATTACGTGTTGGATTCCAACAATCCATCAATGTAAGAAATTCTGAGGGAATGCATTCCTCTAAAGGTTTTGTTTCAGATGATGTGGTATTCAGCAGGAGTCAAGGAATCAAGCAAGAAAAAAGTTTCTATTCTGTGAAAGACAACTTTACTACATTGTTTGAAAGGAACAGGATTTCCTCTTTTGATGTAAATGGTAACATAAGGGCTTCAAGTTCTAATCCACTTCAAAGAGACAATGATAGAGAAACTGGTCAAGGAGATTCGTTATCAGATCAGAGACTGTTTTCATGTGTAACATGTGGAATACTATGCTTTTCCTGTGTTGCTATTGTACAGCCTAGAGAACCAGCAGCTAGATATCTTATGTCAGCTGATTGCAGCTTCTTTAATGATTGGGTTGTTGGCTCTGGAGTATCTAGCAATAAATTTACTATTGCCCTTGAAGAAGCAACTATTGCTGAGCCAAACATGTATACAGGCAGGTTTTATAAGTTCTATATCCAGTCTTTCATACTTTATGGTATACATGATGTTTCTGTTCAATCTTCTCGGGAGGCTTTAAATACTGAAAGTGAAAATGGCAATACAGCTCTTGCATTATTGGCTTCAGCATATGGAAATTCATCTGACTCTGAGGAAGATCAGATTGCAGATGAGAGTCACGAATCAAATAAACAGGATTATAATATCACATCAGGGGTTACATTTGAAAATACAAGGACAGTGCCTAATTCCACCTCTAATTGTTCCCAACAAGCTCATAATGCTGACAGGTCATTGTCTAACAAGTCTATGGTTGCCTTTGATAATAAAAATACTTCGATGGTGCTACAAGCTGATGAAGACTCATCCAGAATGCATGTTTTTTGTCTAGAGCATGCTGCAGAAGCAGAACAGCAACTTCGCCCAATAGGTGGAGCCCACATATTGCTCCTTTGTCATCCAGACTATCCCAAGATAGAGGCTGAAGCAAAAATGGTGGCAGAAGATCTGGGGATTGATTACATGTGGAAGAAAATTGCATACAGGCACGCTTCCACGGAGGATGAGGAGAGGATCCAGTCGGCTCTGGACAATGAGGAAGCTATTCCTGGGAATGGTGACTGGGCTGTAAAGCTGGGAATCAATCTCTTTTATAGTGCAAATCTTAGCCGCTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATACTATTCATTTGGTTGTAGCTCTCCAGCAAGCTCACCTGTAGAACCAAAGGTATACCAAAGAAGGGTCAACAGGCAGAAAAAGGTTGTTGCTGGGAAATGGTGTGGCAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCAAAAAGAGACTCCGAAGATGTTGAGGATGAGAAACTCTTACTTGGGTGGATATTACCTGATGAGAAATTTGAGAGATCAGAAATTACCCTCAAAAGTGAAACTACTAGCAGAAAATCAGGTAAGAAAAGGAAAATGACAGCTGAGAATGGACGACCCAAGAAAGGAAGTTATGCTAAGAAAAATGTAGTTGCAGATAATTCCACTGAAGGTAAACACAACTCACAGCCAAGGAGGATTCTTAGAAATAAGAAAGCTAGGTGTGTTGAAAGAGACCATGCTGCTTTGAAAGGGGATTATTGTCCCCCATATCATCGGAAATCTATAAGCAAGCAAGCAAACTGCTCTGAAAGTGATGCAGTTTCTGATGATTCTCTTGATGATGATGATCACATGCATCATAGGAGGAATGCTATTGTTGAAAAAGACAAATTTATTGACAATGATGTTTCAAACGATACAGTGGACTGTGATTCTGACTGGCAGCAGAGGGAAGAACTTAGCAGCAAGAAAGTTGAAGATACAGAGAGAGATGCAATTTCAGAGGATTCTTTGGATGTTGGTTCTCTTCAATTGCTTAGGAAGAATTCCAGAGCCAAGCATGCCAAAAACATAAGTCAAGAAGATATAATTTCTGATGACCAAATGGAGAGTCCTTTGCAAAAGCGGCAAAGGAGAATTCCTAAAAGCAGGCAGGGCAAATACCTTACTGGAAAAGATATAATATCTGATGACCAACTAGAGCATAAAAAGAAGAAGCAGCAACGGAAGAATCCTAAAAGCAGGCAAGCCAAATACCTCAATGAAGAGGATATTGCATCAGATGACCAATTGGAGGGCCATTATCGTAGATATCAGAGAAAGAATTCTAGAGGAAGACATGCCAAATGTGTAGCAGGGGAAGATGGCATGCCTGATGACCAATTGGAGGATCGTTGTCAGAAGCAGCAAACAAGTTTCTCTAGGAAAAGGCAAAACAAAGGCATTGATAGAGAGGTTAAAAATGAAATATCTGATGACCACTTGGAGGACCATTTTCTGAAGCAGCATAGAAGATTTCCTAAGAGCAGGCAAAACAAACACACTGATAAAGAAGTCATGGATGACTTAGCTGAGAATAATTCTCATCTGCTGCATAGAACTCCCAAAAGGAAGCAAGCTAAATGCATGGAAGAAGATGATATGAATTCAGATGATGAAATGGAAGATAATCAGCCGCTGAGGAGAACACTTCGAAGTAAACAAGCTAAACCAAAGACACTTCAACAGATGAAACAAGCTAATTCCTTCCAAGCGAAAAAGCAGGCATCTCGGCCCATAAAACAGGGATCTCGGATGCTTGTGAAATCAAAGGCTCCTCAGCAAATAAAACAGCCTTCTCATTTGCGGAATAAGCAATCTAATAACACCCAGGAATTTAGTTTAGATATGGAAGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGGAAGAGAGCCACAAAAGCTCAGGAATCTGAGGGAAAATTGAAAGACAAGCAAACAAAAAGGATGAAGGTGAAGAATGCTGCAGCTGCAAAGGTTTCGGTTGGCGATGCCAGAATGCAGGATGGGGAAGCAGAATATCAGTGTGATATTGATGGGTGCACTATGAGTTTTGGGTCAAAACAGGAGCTGATGCATCATAAGAGAAACATCTGCCCTGTAAAAGGGTGTGGGAAGAAGTTTTTTTCACACAAGTATCTGGTGCAGCATCGTCGAGTTCATGAGGATGAGCGCCCCTTGAAGTGCCCTTGGAAGGGATGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACAGAGCACATTCGAGTCCACACTGGTGCACGACCTTATGTATGTGCTGAGCCAGATTGTGGACAAACATTCAGATTTGTTTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCAGCAAAGAAGAATTGTCAATAG | 4617 | 0.4434 | MVGVCEGNGEVLSWLKSMPVAPEYRPSAAEFQDPIGYIFKIEKEASKYGICKIIPPFPPSSRKTAIANLNRSLAEAGSTFTTRQQQIGFCPRRPRPVQRPVWQSGDRYTFSEFESKAKSFEKTYLKRHSKKGSGSGSGLGPLETETLFWKATLDKPFSVEYANDMPGSAFSPKCRHAGDPSSLADTPWNMRAVSRAKGSLLQFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFATLGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHSGFSHGFNCGEAANIATPEWLRFAKDAAIRRASLNYPPMVSHFQLLYDLALALCSSIPASISAEPRSSRLKDKKKGEGETVIKELFVQDVLQNNDLLHILGKGSDVVLLPHSSVDIFVCPKLRVGFQQSINVRNSEGMHSSKGFVSDDVVFSRSQGIKQEKSFYSVKDNFTTLFERNRISSFDVNGNIRASSSNPLQRDNDRETGQGDSLSDQRLFSCVTCGILCFSCVAIVQPREPAARYLMSADCSFFNDWVVGSGVSSNKFTIALEEATIAEPNMYTGRFYKFYIQSFILYGIHDVSVQSSREALNTESENGNTALALLASAYGNSSDSEEDQIADESHESNKQDYNITSGVTFENTRTVPNSTSNCSQQAHNADRSLSNKSMVAFDNKNTSMVLQADEDSSRMHVFCLEHAAEAEQQLRPIGGAHILLLCHPDYPKIEAEAKMVAEDLGIDYMWKKIAYRHASTEDEERIQSALDNEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYSFGCSSPASSPVEPKVYQRRVNRQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDVEDEKLLLGWILPDEKFERSEITLKSETTSRKSGKKRKMTAENGRPKKGSYAKKNVVADNSTEGKHNSQPRRILRNKKARCVERDHAALKGDYCPPYHRKSISKQANCSESDAVSDDSLDDDDHMHHRRNAIVEKDKFIDNDVSNDTVDCDSDWQQREELSSKKVEDTERDAISEDSLDVGSLQLLRKNSRAKHAKNISQEDIISDDQMESPLQKRQRRIPKSRQGKYLTGKDIISDDQLEHKKKKQQRKNPKSRQAKYLNEEDIASDDQLEGHYRRYQRKNSRGRHAKCVAGEDGMPDDQLEDRCQKQQTSFSRKRQNKGIDREVKNEISDDHLEDHFLKQHRRFPKSRQNKHTDKEVMDDLAENNSHLLHRTPKRKQAKCMEEDDMNSDDEMEDNQPLRRTLRSKQAKPKTLQQMKQANSFQAKKQASRPIKQGSRMLVKSKAPQQIKQPSHLRNKQSNNTQEFSLDMEEEEEGGPSTRLRKRATKAQESEGKLKDKQTKRMKVKNAAAAKVSVGDARMQDGEAEYQCDIDGCTMSFGSKQELMHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPDCGQTFRFVSDFSRHKRKTGHSAKKNCQ | 1538 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma04g01859 | 1538 | MobiDBLite | consensus disorder prediction | 917 | 943 | - | - | |
| Gma04g01859 | 1538 | ProSiteProfiles | JmjC domain profile. | 175 | 351 | IPR003347 | - | |
| Gma04g01859 | 1538 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 1477 | 1499 | IPR013087 | - | |
| Gma04g01859 | 1538 | MobiDBLite | consensus disorder prediction | 1258 | 1279 | - | - | |
| Gma04g01859 | 1538 | SUPERFAMILY | beta-beta-alpha zinc fingers | 1418 | 1474 | IPR036236 | - | |
| Gma04g01859 | 1538 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 1505 | 1536 | IPR013087 | - | |
| Gma04g01859 | 1538 | Pfam | jmjN domain | 22 | 55 | IPR003349 | - | |
| Gma04g01859 | 1538 | MobiDBLite | consensus disorder prediction | 986 | 1017 | - | - | |
| Gma04g01859 | 1538 | SUPERFAMILY | beta-beta-alpha zinc fingers | 1493 | 1527 | IPR036236 | - | |
| Gma04g01859 | 1538 | SMART | JmjN_1 | 20 | 61 | IPR003349 | - | |
| Gma04g01859 | 1538 | MobiDBLite | consensus disorder prediction | 1099 | 1158 | - | - | |
| Gma04g01859 | 1538 | MobiDBLite | consensus disorder prediction | 1335 | 1360 | - | - | |
| Gma04g01859 | 1538 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 1445 | 1474 | IPR013087 | - | |
| Gma04g01859 | 1538 | MobiDBLite | consensus disorder prediction | 1258 | 1403 | - | - | |
| Gma04g01859 | 1538 | MobiDBLite | consensus disorder prediction | 509 | 528 | - | - | |
| Gma04g01859 | 1538 | Pfam | JmjC domain, hydroxylase | 215 | 333 | IPR003347 | - | |
| Gma04g01859 | 1538 | Gene3D | Classic Zinc Finger | 1502 | 1531 | - | - | |
| Gma04g01859 | 1538 | SMART | c2h2final6 | 1422 | 1444 | IPR013087 | - | |
| Gma04g01859 | 1538 | SMART | c2h2final6 | 1505 | 1531 | IPR013087 | - | |
| Gma04g01859 | 1538 | SMART | c2h2final6 | 1445 | 1469 | IPR013087 | - | |
| Gma04g01859 | 1538 | SMART | c2h2final6 | 1475 | 1499 | IPR013087 | - | |
| Gma04g01859 | 1538 | Gene3D | Cupin | 14 | 355 | - | - | |
| Gma04g01859 | 1538 | SMART | cupin_9 | 182 | 351 | IPR003347 | - | |
| Gma04g01859 | 1538 | PANTHER | LYSINE-SPECIFIC DEMETHYLASE | 7 | 1528 | - | - | |
| Gma04g01859 | 1538 | MobiDBLite | consensus disorder prediction | 1181 | 1223 | - | - | |
| Gma04g01859 | 1538 | MobiDBLite | consensus disorder prediction | 917 | 973 | - | - | |
| Gma04g01859 | 1538 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 1475 | 1504 | IPR013087 | - | |
| Gma04g01859 | 1538 | PANTHER | LYSINE-SPECIFIC DEMETHYLASE REF6 | 7 | 1528 | - | - | |
| Gma04g01859 | 1538 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 1507 | 1531 | IPR013087 | - | |
| Gma04g01859 | 1538 | ProSiteProfiles | JmjN domain profile. | 21 | 62 | IPR003349 | - | |
| Gma04g01859 | 1538 | SUPERFAMILY | Clavaminate synthase-like | 107 | 370 | - | - | |
| Gma04g01859 | 1538 | MobiDBLite | consensus disorder prediction | 1368 | 1399 | - | - | |
| Gma04g01859 | 1538 | SUPERFAMILY | beta-beta-alpha zinc fingers | 1461 | 1503 | IPR036236 | - | |
| Gma04g01859 | 1538 | MobiDBLite | consensus disorder prediction | 959 | 973 | - | - | |
| Gma04g01859 | 1538 | Gene3D | Classic Zinc Finger | 1473 | 1501 | - | - | |
| Gma04g01859 | 1538 | Gene3D | Classic Zinc Finger | 1445 | 1472 | - | - | |
| Gma04g01859 | 1538 | MobiDBLite | consensus disorder prediction | 1303 | 1325 | - | - | |
| Gma04g01859 | 1538 | MobiDBLite | consensus disorder prediction | 1172 | 1223 | - | - | |
| Gma04g01859 | 1538 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 1447 | 1469 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma04g01859 | Gma-Chr4 | 48731043 | 48740786 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma04g01859 | 342 | 957 | C2H2 Transcription Factor Family | AT3G48430 | 48.177 | 2.94e-165 | 524 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Gma04g01859 | JmjC | 3.3e-36 | CL0029 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma04g01859 | - | - | gmx:100775271 | 2966.02 |