Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01854 ATGATGGATGGGCGGCGGCATTCAGTTGATATTCCAATTTCCAAAACTCTTGTGGCACTGAGGAGGGTCAGGTCATTGAGGGATCCAACTACTAATTCCATGAGCAAACTCTCTTCTTTGGTTGATAATGTGCACTGGGAAAACGGTTCTGCCAATGAAATTTCCCTCCGGTTTTCGGATGCCACTCGGCTGTGTGATTCCGATGACAATGCTGCTTTCAGATCAAGGAATTTAGGTTTCAAGGGACATAGGGAACCGGATGATGCTGATTTTGTATTGAATCATGGCTTGTTGAACTCAAGGTTGAAGCCTAGTGGGATGTCTTGTAAGGATGATCAACGAGATGATGAACTAGTTTACTCAAAGCCTAATCTGCAGTGTACTTCTGGAGATAAATCACCAAGTGAAAGCTGTGGTAGCAACCATGGGGGTAAAGGATTGGACTTGGCTTGTATTGTGCTTCCAAGTAATAATTTCAAGGATGGGGATTCATGCTATGTAGGAACTGCTAGATCATCTCAATTAGGGAGAATAGATTGCTCCAAGTCAGCCAAAAAGTCTCTACGCAAGAATCAAGTGAACCCATCGGAGTTAGCGGGAAGTATTGCTAGCAATGAAGGTAGTCCATGTCCTTCTGGTTATGATGCTTTTTCGCCATATTGTGCTTCAGTAGGTATAAATCAAGATGTTGATGTTTTAGATAATAATGATAATGGATGTGGAATAAGCTGCTGTTGGTCAAAATCACCAAGGTTTAGAGAATCAAATCTATATGGCGAGATCGAAGACCGTCCCTTGATAACTCACCGTGTTGATGAGACAGATCTTCATGCACACAGAAGCATGAGACACAATGGTGGTGGTGGGATTAGTCCAACTTTGGAAACTCCTAGAAGTTTATCGATGAAATTCAGGCCTAAATCATTTAGTGATTTGGTGGGACAAAATGTGGTAGTAAGGTCTCTTTTGGGTGCCATCTCCAGAGGAAGGATAACATCATTTTATCTCTTCTATGGTCCACGTGGCACTGGCAAGACATCTGCGTCTAGGATGTTTGCTGCTGCACTGAATTGCCTCTCTGTTGTGGAGCAAAGGCCATGTGGTCTATGCAGAGAATGTGTTTTGTTATTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTGGATTCTGTGAGAATCAATCGTGCAGACCAGGTTAAATCCCTTATTAAGAATGCAAGCATCCCTCCGGTTTCCTCACGTTTTAAGGTTTTCTTTATTGATGAGTGCCAGTTATTGAATGGGGAGACATGGGCAAGCATTTCAAATAGCCTAGAGAACCTTTCTCAATATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCTCCAAGTGCAGTTTCCCGGGCTCAGAGGTATCACTTTCCGAAGGTTAAAGATGCCGACATTGTATGCAGACTAGAAAAAATTTGCGCCGAAGAAGGTCTTGAATTTGAACAGGATGCTTTGGACTTCATTGCTGCAAAATCCTGTGGTTCTGTTAGGGATGCAGAAATGATGCTTGATCAGATGAGCTTGCTTGGTAAAAAGATCAATATTTCTTTAGCTTATGAGCTGACTGGGATCGTATCGGATGATGAGTTGCTTGATTTGCTGGATCTGGCTTTGTCATCTGACACTTCGAATACAGTTATAAGAGCTCGGGAGCTCATGAGATCAAGGATAGATCCTTTGCAACTTGTATCTCAGTTGGCAAATCTCATTATGGACATCCTTGCAGGGAAATGTGAAAATGGTGGTTCTGAAGTGAGAAGTAGATTTTCTAGGAGATACAGCTCGGAAGCTGATCTGCAGAAACTGAACAACGCATTGAAAGTACTTTCTGATACTGAGAAGCACTTAAGATTTTCGAAGAATCAAACAACGTGGTTCACCGTAGCCCTCCTACAGTTAAGCTCTGTAGATTGTCAATCTGTGGATGCAAATGATACCAAGCTGAGCCTTAGAGGTGCATGCAATGGAGGGCAAAGCTTGGAACATTTTGACACAGGTCTGTGTGATAACAAGTCATACAGATTAGAAGTGCCAGAGGATCACAAAGGAACATTGGATTCCATTTGGTATAAAGCTACGGAGATGTGTCATTCTGGTCAGCTCAAAAATTTTCTCAGGAAGAAGGGGAAGTTGTCTTCACTTCATGTTGATCGCAGTACAGCTTGTCTTGCTATTGCTGAGTTGGAGTTCCACCATCGCCACCATGTATCTAAGGCTGAGAAGTCATGGAAAGCGATTGCAAGTTCCATGCAGTTCATACTGGGTTGCAACATTGAGTTGAGGATCACTTATGCACCGTGTGCTTCTGATCCTAAGTATGCCAAACTTAGATCATCTTTCAGTATCTTCGGTTGCTCGCGCAGAATTCGTCAACAGAAGTCCTTATCATCTAATGAACGAGGGAGTGAATCAGATTACGCTGACAACAACTCAGAAAATCCCAAGAAGGATAGAACATCTACCTCTGATTGCGGAATGGATGCTGCAACAGCTTTGAGAAGTAGTGAAGGGAATTTGCTCAGCTCAGGAGAAAGATTTTTGAATAGGTCATTTCAAGAGACTAAGAGGACATCATTTGCCAAAGTGGATTTCTCTAAGGAAGAGGGATACAATTGTGCACATCTTGATCCATCAATGCTTGATTCAGATAATAATCACTCTAACTGTTTTCCTAAAACTCTTTGGCTTCAAAAGAAGTTCCGTTCTTCATATTCATCCAAGTTGACTTTTCAGGGTATTCTACCACAGAAAGATTTTGTTGTATCTGTCCCGAAGAAGTGTACATGTTCTGGGACATAG 2835 0.4208 MMDGRRHSVDIPISKTLVALRRVRSLRDPTTNSMSKLSSLVDNVHWENGSANEISLRFSDATRLCDSDDNAAFRSRNLGFKGHREPDDADFVLNHGLLNSRLKPSGMSCKDDQRDDELVYSKPNLQCTSGDKSPSESCGSNHGGKGLDLACIVLPSNNFKDGDSCYVGTARSSQLGRIDCSKSAKKSLRKNQVNPSELAGSIASNEGSPCPSGYDAFSPYCASVGINQDVDVLDNNDNGCGISCCWSKSPRFRESNLYGEIEDRPLITHRVDETDLHAHRSMRHNGGGGISPTLETPRSLSMKFRPKSFSDLVGQNVVVRSLLGAISRGRITSFYLFYGPRGTGKTSASRMFAAALNCLSVVEQRPCGLCRECVLLFSGRSKDVKEVDSVRINRADQVKSLIKNASIPPVSSRFKVFFIDECQLLNGETWASISNSLENLSQYVVFVMITPDLDKLPPSAVSRAQRYHFPKVKDADIVCRLEKICAEEGLEFEQDALDFIAAKSCGSVRDAEMMLDQMSLLGKKINISLAYELTGIVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKCENGGSEVRSRFSRRYSSEADLQKLNNALKVLSDTEKHLRFSKNQTTWFTVALLQLSSVDCQSVDANDTKLSLRGACNGGQSLEHFDTGLCDNKSYRLEVPEDHKGTLDSIWYKATEMCHSGQLKNFLRKKGKLSSLHVDRSTACLAIAELEFHHRHHVSKAEKSWKAIASSMQFILGCNIELRITYAPCASDPKYAKLRSSFSIFGCSRRIRQQKSLSSNERGSESDYADNNSENPKKDRTSTSDCGMDAATALRSSEGNLLSSGERFLNRSFQETKRTSFAKVDFSKEEGYNCAHLDPSMLDSDNNHSNCFPKTLWLQKKFRSSYSSKLTFQGILPQKDFVVSVPKKCTCSGT 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01854 944 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 521 IPR027417 -
Gma04g01854 944 CDD AAA 313 463 - -
Gma04g01854 944 Gene3D - 473 535 - -
Gma04g01854 944 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 299 645 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Gma04g01854 944 Pfam DNA polymerase III, delta subunit 315 472 - -
Gma04g01854 944 SUPERFAMILY post-AAA+ oligomerization domain-like 536 646 IPR008921 GO:0003677|GO:0006260
Gma04g01854 944 MobiDBLite consensus disorder prediction 817 834 - -
Gma04g01854 944 Gene3D - 536 649 - -
Gma04g01854 944 Gene3D - 293 470 IPR027417 -
Gma04g01854 944 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 109 944 - -
Gma04g01854 944 MobiDBLite consensus disorder prediction 805 836 - -
Gma04g01854 944 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 109 944 - -
Gma04g01854 944 CDD HLD_clamp_pol_III_gamma_tau 472 535 IPR045085 -
Gma04g01854 944 SMART AAA_5 331 473 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01854 Gma-Chr4 48665179 48669460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01854 290 537 Core DNA Replication Machinery Family AT1G21690 25.296 1.06e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01854 - - gmx:100819111 1867.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01854 04 48665179 48669460 Gma04g01854 04 48665179 48669460 ECH
Gma04g01854 04 48665179 48669460 Gma06g01555 06 15102837 15108021 GST
Gma17g01176 17 10297575 10301911 Gma04g01854 04 48665179 48669460 PCT
Gma05g00419 05 3963514 3967896 Gma04g01854 04 48665179 48669460 PCT
Gma04g01854 04 48665179 48669460 Gma17g01176 17 10297575 10301911 PCT
Gma04g01854 04 48665179 48669460 Gma05g00419 05 3963514 3967896 PCT