Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01845 ATGTCTATCACTTCTTCCACTTCCTTCAAGTCCCTCACTATGGCCGAGTCCTGCCTCCTCTCTTCTCCCTCCTCACTCTTCAACAACAAAACCAAACCCTCTCTATTCTCACCCCCCTCCAAACCCCTCACACTCCAATTCTCATGCATCAACTCCTCAGTCTCTCTCTCCCTCGCCGCGCGAGCTCACCGCTCTCCCCTCGTCACGCGCGTGGCCCAAACTTCCGATTGGGCCCAACAAGAAGAAGACGACACCGCCACCTTCCAAGACGAAGAACAGGGCCTTAGTGAAACCCAAGCGGGCCTTTCCAGTTGGGAGCCCAACGGCGAAGACGCCGGAGAAGAGAGCTTCGCCGAACCGCCGGAAGAGGCAAAGCTCTTCGTTGGGAACTTGCCTTACGACGTTGATAGCCAGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAGGTTATTTATAATAGGGAAACTGACCAGAGTCGCGGTTTTGGGTTTGTGACGATGAGTACCGTTGAAGAAGCTGAGAACGCCGTGGAGAAATTCAGTCGTTACGATTTTGATGGAAGATTGTTGACTGTTAATAAGGCTTCTCCAAGAGGAACTCGGCCGGAACGCCCGCCGCCTCGTCACTCCTTTGAGCCTTCCTTATCAATCTATGTTGGTAATTTGCCATGGGATGTTGATAATACCCGGCTGGAGCAAATTTTCAGTGAACATGGTAATGTGGTGAATGCTCGGGTAGTCTATGACAGGGAGACTCGTCGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAGACGGAAATGAAAGATGCGGTTGCTGCTCTTGATGGTCAGAGTTTGGACGGAAGGCCAATTAGGGTGAGTGTTGCCGAGGACAGGCCAAGGCGTGGTTCCTTTTGA 918 0.5207 MSITSSTSFKSLTMAESCLLSSPSSLFNNKTKPSLFSPPSKPLTLQFSCINSSVSLSLAARAHRSPLVTRVAQTSDWAQQEEDDTATFQDEEQGLSETQAGLSSWEPNGEDAGEESFAEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAENAVEKFSRYDFDGRLLTVNKASPRGTRPERPPPRHSFEPSLSIYVGNLPWDVDNTRLEQIFSEHGNVVNARVVYDRETRRSRGFGFVTMSDETEMKDAVAALDGQSLDGRPIRVSVAEDRPRRGSF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01845 305 Gene3D - 209 305 IPR012677 -
Gma04g01845 305 SUPERFAMILY RNA-binding domain, RBD 120 213 IPR035979 GO:0003676
Gma04g01845 305 PANTHER RIBONUCLEOPROTEIN 1 94 - -
Gma04g01845 305 PANTHER RIBONUCLEOPROTEIN 109 305 - -
Gma04g01845 305 MobiDBLite consensus disorder prediction 73 120 - -
Gma04g01845 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 292 IPR000504 GO:0003723
Gma04g01845 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 195 IPR000504 GO:0003723
Gma04g01845 305 Gene3D - 70 208 IPR012677 -
Gma04g01845 305 SMART rrm1_1 221 294 IPR000504 GO:0003723
Gma04g01845 305 SMART rrm1_1 125 198 IPR000504 GO:0003723
Gma04g01845 305 MobiDBLite consensus disorder prediction 91 105 - -
Gma04g01845 305 CDD RRM_HP0827_like 125 202 - -
Gma04g01845 305 SUPERFAMILY RNA-binding domain, RBD 210 303 IPR035979 GO:0003676
Gma04g01845 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 202 IPR000504 GO:0003723
Gma04g01845 305 CDD RRM_HP0827_like 222 297 - -
Gma04g01845 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 298 IPR000504 GO:0003723
Gma04g01845 305 PANTHER OS02G0815200 PROTEIN 1 94 - -
Gma04g01845 305 PANTHER OS02G0815200 PROTEIN 109 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01845 Gma-Chr4 48543601 48546196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01845 126 305 Eukaryotic Initiation Factors Gene Family AT3G16380 26.111 1.00e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01845 - - gmx:100810381 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01564 06 15203276 15206025 Gma04g01845 04 48543601 48546196 ECH
Gma04g01845 04 48543601 48546196 Gma04g01845 04 48543601 48546196 ECH
Gma04g01845 04 48543601 48546196 Gma06g01564 06 15203276 15206025 GST
Gma17g01169 17 10217076 10219178 Gma04g01845 04 48543601 48546196 PCT
Gma05g00411 05 3874521 3877228 Gma04g01845 04 48543601 48546196 PCT
Gma04g01845 04 48543601 48546196 Gma17g01169 17 10217076 10219178 PCT
Gma04g01845 04 48543601 48546196 Gma05g00411 05 3874521 3877228 PCT