Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01840 ATGGAGATGGAGCGCATCGTTGAATTCCCTCACACCTACATGGATCGACCCCCAAGAAAGAGAGCGCGTTTGGGCTGGGACATCGCTGAGGCCCCCAAGGCTCAGGTAGGATTGTTTTGTGGACAAGAGGTTGAGAATATTTCAAGCTATGCTCCTTCAGAACATCCCCCTAGTTCTCTGTTTAAGGGAGTTGCCCGAAATGGTTCTCCCCCATGGCGAGATGATGACAAAGATGGCCATTACATGTTTGAGCTTGGAGATAATTTAACTTCTCGCTATAAGATCCATAGTAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGTGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATAAAAATTGTCCGTGGGATAAAGAAGTATCGAGAGGCAGCCATGATAGAAATTGAGGTATTGCAACAGCTTGGGAAACACGATAAAGGTAGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAGTTATCGTTCATTTCCCATTGATCTTGTCCGTGAGATTGGCTGGCAACTGTTGGAATGTGTAGCATTTATGCATGATTTACGCATGATCCATACTGACCTGAAGCCTGAAAACATACTTCTAGTTTCACCAGAGTATCTTAAGATTCCTGACTACAAGAGTACAACCAGATCACCAAGCTCCTTTTTCAAGAGAGTGCCCAAGTCAAGTGCTATAAAAGTTATTGATTTTGGCAGCACTACATATGAACGAGAAGATCAGACTTACATTGTGTCAACTCGTCATTATAGGGCACCTGAAGTTATCCTTGGACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGCTGTATATTGGTTGAATTATGCACTGGTGAAGCTTTGTTTCAGACTCATGAAAATTTAGAGCATCTGGCTATGATGGAGAGGGTGCTTGGTCCTATACCACAGCAGATGTTAAAGAGAGTTGACCGACATGCAGAGAAGTATGTTCGAAGGGGTAGGTTGGACTGGCCAGAGGGTGCAATCTCACGAGAGAGTATTAAAGCTGTTATGAAGCTTCCCCGACTACAGAACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTTTTGCAGGGGCTACTTAGATATGACCCCTTTGAAAGACTTACAGCTAGGGATGCTTTGAGGCATTCCTTCTTTATGAGAGATCATCTTAGGAGATGA 1278 0.4351 MEMERIVEFPHTYMDRPPRKRARLGWDIAEAPKAQVGLFCGQEVENISSYAPSEHPPSSLFKGVARNGSPPWRDDDKDGHYMFELGDNLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLGKHDKGSNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREIGWQLLECVAFMHDLRMIHTDLKPENILLVSPEYLKIPDYKSTTRSPSSFFKRVPKSSAIKVIDFGSTTYEREDQTYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPIPQQMLKRVDRHAEKYVRRGRLDWPEGAISRESIKAVMKLPRLQNLIMQHVDHSAGDLIHLLQGLLRYDPFERLTARDALRHSFFMRDHLRR 425
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01840 425 SUPERFAMILY Protein kinase-like (PK-like) 80 421 IPR011009 -
Gma04g01840 425 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 425 - -
Gma04g01840 425 CDD PKc_CLK 80 418 - -
Gma04g01840 425 Gene3D Transferase(Phosphotransferase) domain 1 147 418 - -
Gma04g01840 425 ProSiteProfiles Protein kinase domain profile. 93 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g01840 425 PANTHER KINASE AFC1 1 425 - -
Gma04g01840 425 Pfam Protein kinase domain 93 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g01840 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Gma04g01840 425 Gene3D Phosphorylase Kinase; domain 1 80 173 - -
Gma04g01840 425 SMART serkin_6 93 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gma04g01840 Gma-Chr4 48507884 48512021 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01840 98 418 Core Cell Cycle Gene Families AT1G76540 25.373 9.12e-27 107
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Gma04g01840 Pkinase 6.5e-50 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01840 K08287 - gmx:100808961 879.782
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01840 04 48507884 48512021 Gma04g01840 04 48507884 48512021 ECH